Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03539 ATGTCTTCTCATCTTCACCAAGGGAATGCTGTCATGCCTATTCTCTTCTTCAAGATTATACTCAAAACTAACCTTAAAATTCTTAAAATACCCAACAAATTTGCACTGAAACATGGAAGTGGTTTGTCCAATCCAGTGTTCTTAAAGCCTCCAGATGGAACAAGGTGGAAGGTGTGTTTGAGCAAAAAGGATGATCAAGTTTGGTTTGAAAAGGGTTGGAAAGAATTCACTCAAAATTACTCTCTGGATCATGGATGCTTGGTTCTGTTTAAATATGAAGGAACTACTTCTTCCCAATTTGATGTCATTATAATTGATGACAGTGATTTAGAAATAGACTATTCTTCCTACAATGGAAATGATGATGATGATGATGTTTCAGTTCAGATTGTGAAGGAAATCCATCCATACAAGAAGAACAAAGAAACCATGAGAGGTGAGAAGAATGTGACTACTTCTTTGTCATTGAATCGGCCAAGGGAACCAAGAGCACGAGAAGAAGCTAACAAATTCGTATCTAACAACCCTTTTTTCACGGTGCTCATAAAGCCTCCTCATATCACACAATACCGACTGTCCATACCAGGTTTGGAAGGTTATGTGGATAAGGAAGTGAAGTATGTGAAGCTTGAGAATGGGGATAGATCGTGGCCTGTGAAGATGCTTAGTTGTAGCAAAACCCCTTCAAATCGCTTCCTTTCTGCTGGGTGGAACTTGTTTGCACAAGAGAATGAGTTGAAGCCTGGAGATGTTTGTATCTTTGAACTTGTTAATATGCAAGATTTGGTCTTTAAGGTTCATGTTTTTGCTGCCCATCATGCTTAA 825 0.3867 MSSHLHQGNAVMPILFFKIILKTNLKILKIPNKFALKHGSGLSNPVFLKPPDGTRWKVCLSKKDDQVWFEKGWKEFTQNYSLDHGCLVLFKYEGTTSSQFDVIIIDDSDLEIDYSSYNGNDDDDDVSVQIVKEIHPYKKNKETMRGEKNVTTSLSLNRPREPRAREEANKFVSNNPFFTVLIKPPHITQYRLSIPGLEGYVDKEVKYVKLENGDRSWPVKMLSCSKTPSNRFLSAGWNLFAQENELKPGDVCIFELVNMQDLVFKVHVFAAHHA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03539 274 Gene3D - 13 109 IPR015300 -
Aip09g03539 274 ProSiteProfiles B3 DNA-binding domain profile. 13 108 IPR003340 GO:0003677
Aip09g03539 274 SUPERFAMILY DNA-binding pseudobarrel domain 173 270 IPR015300 -
Aip09g03539 274 Gene3D - 158 273 IPR015300 -
Aip09g03539 274 PANTHER B3 DOMAIN-CONTAINING 12 271 - -
Aip09g03539 274 Pfam B3 DNA binding domain 25 103 IPR003340 GO:0003677
Aip09g03539 274 Pfam B3 DNA binding domain 177 270 IPR003340 GO:0003677
Aip09g03539 274 SMART B3_2 178 270 IPR003340 GO:0003677
Aip09g03539 274 SMART B3_2 16 108 IPR003340 GO:0003677
Aip09g03539 274 CDD B3_DNA 15 106 IPR003340 GO:0003677
Aip09g03539 274 SUPERFAMILY DNA-binding pseudobarrel domain 15 106 IPR015300 -
Aip09g03539 274 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 271 - -
Aip09g03539 274 CDD B3_DNA 177 269 IPR003340 GO:0003677
Aip09g03539 274 ProSiteProfiles B3 DNA-binding domain profile. 177 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03539 Aip-Chr9 142076994 142087667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03539 120 269 B3 DNA Binding Superfamily AT3G18990 32.484 2.95e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip09g03539 B3 2.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03539 - - lang:109346569 260.381