Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03538 ATGTCATCTCCACCAGGCCCCATTCACTTTTTCCAGATTGTTAATGAAACCAGCCTTCAAAATGGTGAATTGAGGATTCGCAGAAGTTTTGTAAGTGAACATTGGCAAGGAATATCAAGCCCGGTATTACTTGTGCTTCCTAATGGTTCCGAATGGAAGATGGACTGGGAAAAGCGTGATGCTGATGTTTGCTTTGTTCAAGGTTGGAAGGAATTTGCAGAGTTTTATTCTTTGGAAAAGGAGCAGGTTTTGATGTTCAAGTATGAAGGAAAGTCGCGGTTCAATGTTATAATACTCGGTCGGAGTGGCTTGGAAAGAGAGTATCCTTTGTTGAATGGAACTCTTGAAGCTGAAGGGAGTGGTAACTCTAAAAGGCCAAACTCTCCGTTGCGAAAAAAGAGAAGAACCAACACAGAAGAAGAAGCTAGATTCAATGAATATTCTCATAATGCAAGGCCAAGGGACAGAGATGGAAGGAGAATCTTCTTAAAATCTGAGGCTTCTAACAATGTGGAGGCACCAAAACATGCTGAAAGTAGTAGTGCTTTGGAGAGAGCCCGGGCCTTCAGTTCTAAGAATCTTTGGTTCTATCGCAGAATGAGACCAGCGTACATCAATAACTATCTTCTGTTCAGAGCAGAAGATTATGTAACACAAGAAGAAAGAAAGGAGAATGAGTTTCTCAGTCTCTGGGTTACCGATGAGAGTAGACCATGGCATGCTAAGATCTCGAAGCATGATAATAATGGACAGATAATGCTTACTACGGGTTGGAAGCAATTTGTAAGGGACAACAACCTGAAACTAAATGATGTTTGTGTTTTTGAGAAAACTAGAAATTCTGAAGGACTTTCATTTAGAGTTATTATCTACCGTGCCACGCAAGAATCAACCAATATTCCATCTCAAGATGGAGCAAACCAAAGCAACCAAACCAATGTTAGAAACAGTTTTGCTGAAAGGGGCCATGAAGGAACTTCAAAAGAATACTCAAAAAATTACAAACGTCGCGGACGTGCCAGCAAATGGACTGAAGATCAGTTCACTATCGCCTTAAAGCAAAGTCAGACGAAAAGAAGTGCGCACATACCTTATGGCTTTGCCAAAAAATATCTACAAAAAGCAAAAGCTTTGACACTGCAGATTGGGAACAGAATATGGGAGATTAAGCTAGACTATTATCCACGTCATTCCTATGCCAGATTATCTTCGGGATGGGACAAATTTGTTAAGGATTGTAATCTTAAGGAAGCAGATGAATGCACCTTTCAGCTGATAGATAGGGAGAACTTTGTATTTGATGTTAGAATTTTAAATTGCATCAACTGA 1329 0.4011 MSSPPGPIHFFQIVNETSLQNGELRIRRSFVSEHWQGISSPVLLVLPNGSEWKMDWEKRDADVCFVQGWKEFAEFYSLEKEQVLMFKYEGKSRFNVIILGRSGLEREYPLLNGTLEAEGSGNSKRPNSPLRKKRRTNTEEEARFNEYSHNARPRDRDGRRIFLKSEASNNVEAPKHAESSSALERARAFSSKNLWFYRRMRPAYINNYLLFRAEDYVTQEERKENEFLSLWVTDESRPWHAKISKHDNNGQIMLTTGWKQFVRDNNLKLNDVCVFEKTRNSEGLSFRVIIYRATQESTNIPSQDGANQSNQTNVRNSFAERGHEGTSKEYSKNYKRRGRASKWTEDQFTIALKQSQTKRSAHIPYGFAKKYLQKAKALTLQIGNRIWEIKLDYYPRHSYARLSSGWDKFVKDCNLKEADECTFQLIDRENFVFDVRILNCIN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03538 442 Pfam B3 DNA binding domain 232 293 IPR003340 GO:0003677
Aip09g03538 442 Pfam B3 DNA binding domain 351 436 IPR003340 GO:0003677
Aip09g03538 442 Pfam B3 DNA binding domain 14 98 IPR003340 GO:0003677
Aip09g03538 442 SUPERFAMILY DNA-binding pseudobarrel domain 3 103 IPR015300 -
Aip09g03538 442 SMART B3_2 10 102 IPR003340 GO:0003677
Aip09g03538 442 SMART B3_2 147 294 IPR003340 GO:0003677
Aip09g03538 442 SMART B3_2 348 441 IPR003340 GO:0003677
Aip09g03538 442 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Aip09g03538 442 ProSiteProfiles B3 DNA-binding domain profile. 363 441 IPR003340 GO:0003677
Aip09g03538 442 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 293 - -
Aip09g03538 442 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 309 438 - -
Aip09g03538 442 Gene3D - 326 441 IPR015300 -
Aip09g03538 442 Gene3D - 175 296 IPR015300 -
Aip09g03538 442 PANTHER B3 DOMAIN-CONTAINING 7 293 - -
Aip09g03538 442 PANTHER B3 DOMAIN-CONTAINING 309 438 - -
Aip09g03538 442 ProSiteProfiles B3 DNA-binding domain profile. 195 294 IPR003340 GO:0003677
Aip09g03538 442 SUPERFAMILY DNA-binding pseudobarrel domain 189 293 IPR015300 -
Aip09g03538 442 MobiDBLite consensus disorder prediction 132 154 - -
Aip09g03538 442 MobiDBLite consensus disorder prediction 316 335 - -
Aip09g03538 442 SUPERFAMILY DNA-binding pseudobarrel domain 348 440 IPR015300 -
Aip09g03538 442 MobiDBLite consensus disorder prediction 115 154 - -
Aip09g03538 442 CDD B3_DNA 348 439 IPR003340 GO:0003677
Aip09g03538 442 CDD B3_DNA 232 292 IPR003340 GO:0003677
Aip09g03538 442 Gene3D - 6 103 IPR015300 -
Aip09g03538 442 MobiDBLite consensus disorder prediction 321 335 - -
Aip09g03538 442 CDD B3_DNA 9 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03538 Aip-Chr9 142071674 142074166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03538 348 435 B3 DNA Binding Superfamily AT3G18990 31.868 2.75e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip09g03538 B3 8.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03538 - - ahf:112712192 848.195