Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03534 ATGGATCTTAGTTTTTGTTTCTCCTGCTTCTTGTTTGTTTGTTATTCAATTTCTCTTCTCTTGGTCTTAGTCAAAGGAATCATTAGTAGTATTCTTAAACACTTTGCATTTGGGAGTTCAAAGAAGGACTTCTACTATCATCTCCTTCCATCAGGTGACAAGAACATGAACATGATGATGATGCAAAACTTAACTGAGAGACTGAGGCCTCTTGTTGGATTGAACGGTTGGGACTACTGTGTATACTGGAAACTAAGTGAAGATCAAAGGTTTGTTGAGTGGTTGGGATGCTGTTGTGGTGGCACTGATCAAAACAATAATGTTGGGGAAGACATTCACATTTTCCCATGTAGGGATACCATGTTCTCACATCCCAGAACTAACCATTGTTATCTTCTTTCTCAGCTTCCTACTTCCATTTCCATGATAGATTCTGGGTATGTATATATCAACTCTAATTTTcgggagtggatcctctccGAAACAATTGGGACCCAGGTTTTGATTCCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACCAAACAAGTACCTGAAGATCATCAAGTAATTGATTTTGTGACAGCACAATGCATTGTGTTGGTAGAGCAAGAAGCAGCAAACAACTCTACAAGTTTCAACATGCAATCAAATGTTGTTGGAGATGATAACAATAATAATAATAATAATAATAATAATAATAATGAAAATCAAGTGATGATGAACAACAACAACAACAATAATCAGTTTGTTCTCACAACTGCACCAGAAACTTCACCACATGATGAAATCCCCATCACTCTATGCAGTTCTCCACTCAACTTCATGCAACAGTTCAGAACAATGAATAAGAACAACGATAACAATGGAGTAGCAGCAGCATTTTCTGAAGAATATCAAGGTTCAATATTCCTCCATGAAAACCAAAACAACAATAACCAGCCAATGAAAGCAGCGGCCATGGAGGAAGAAGAAGAAGAAGAGCAGCAAGTGGGGACAAAGGAGAATAACAACAACAAAAATGAAGGAGGAGTTGTTGGTGTTGGAAGGTCAGATTCAATGTCAGATTGCAGTGATCAGAACGAAGAAGAGGAAGATGGAAAATACAGAAGGAGGAATGGAAAAGGGAACCAATCAAAGAACCTTGTTGCTGAAAGAAAGAGAAGGAAGAAACTGAATGACAGGCTGTACAATCTTCGTTCATTGGTTCCAAGAATATCCAAGCTTGATAGAGCTTCCATTCTTGGCGATGCAATTGAGTTTGTTAAGGATTTGCAAAAGCAGGTCAAGGATCTTCAAGATGAACTTGAGGACAATAACAACAATTCCGACACTACTGCTGTTGATCATCATGATAGTAGCAACCAGTTTCTTGATCATTTCGGAGCATCCTATGTTATCCCAAATCACAAGCATATGCAGCAAGAAGCAGTGGATGCCACTACTCTTACCATGGACAAGCAGCACTCCCAACAAATGGAGCCGCAAGTGGAAGTGGCAGTGATAGATGGGAAGGAGTACTTTGTGAAGGTATTCTGTGAGCACAGAGCAGGTGGGTTTGTGAAATTGATGGAGGCACTCAACACCTTAGGCATGGATGTTGTACATGCCACTGTCACTAGCCACAAAGGCCTTGTCTCTAATGTCTTCAAAGTTGAGAAAAAGGATAGTGATATGGTGGAGGCTGAGGATGTGAGAGACTCATTGCTAGAGCTTACAAGGAACCCATCATGTAGGGTGTGGAGTAATAATAATACAAAGAACAATAATCCCACATCGGAGAATTCCAATGGTGTTGGTGTGGGAAGGGATCATCATCATCATCATCATCATCACATGCCCGCATATCATCCCCATCCATTTCATACTTAA 1872 0.3958 MDLSFCFSCFLFVCYSISLLLVLVKGIISSILKHFAFGSSKKDFYYHLLPSGDKNMNMMMMQNLTERLRPLVGLNGWDYCVYWKLSEDQRFVEWLGCCCGGTDQNNNVGEDIHIFPCRDTMFSHPRTNHCYLLSQLPTSISMIDSGYVYINSNFREWILSETIGTQVLIPVPGGLVELFVTKQVPEDHQVIDFVTAQCIVLVEQEAANNSTSFNMQSNVVGDDNNNNNNNNNNNNENQVMMNNNNNNNQFVLTTAPETSPHDEIPITLCSSPLNFMQQFRTMNKNNDNNGVAAAFSEEYQGSIFLHENQNNNNQPMKAAAMEEEEEEEQQVGTKENNNNKNEGGVVGVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKDLQDELEDNNNNSDTTAVDHHDSSNQFLDHFGASYVIPNHKHMQQEAVDATTLTMDKQHSQQMEPQVEVAVIDGKEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSDMVEAEDVRDSLLELTRNPSCRVWSNNNTKNNNPTSENSNGVGVGRDHHHHHHHHMPAYHPHPFHT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03534 623 MobiDBLite consensus disorder prediction 317 387 - -
Aip09g03534 623 CDD ACT_UUR-ACR-like 509 572 - -
Aip09g03534 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 379 440 IPR036638 GO:0046983
Aip09g03534 623 CDD bHLH_AtAMS_like 379 445 - -
Aip09g03534 623 MobiDBLite consensus disorder prediction 580 599 - -
Aip09g03534 623 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 158 581 - -
Aip09g03534 623 Gene3D - 365 442 IPR036638 GO:0046983
Aip09g03534 623 MobiDBLite consensus disorder prediction 580 623 - -
Aip09g03534 623 MobiDBLite consensus disorder prediction 603 623 - -
Aip09g03534 623 SMART finulus 382 431 IPR011598 GO:0046983
Aip09g03534 623 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 158 581 - -
Aip09g03534 623 MobiDBLite consensus disorder prediction 215 236 - -
Aip09g03534 623 Coils Coil 317 337 - -
Aip09g03534 623 Coils Coil 415 442 - -
Aip09g03534 623 Pfam Helix-loop-helix DNA-binding domain 383 426 IPR011598 GO:0046983
Aip09g03534 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 425 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03534 Aip-Chr9 142024479 142028570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03534 61 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 40.492 5.84e-116 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g03534 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03534 - - aip:107616200 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03534 09 142024479 142028570 Aip09g03534 09 142024479 142028570 ECH