Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03528 ATGATGGATTTCGATGAATATGAGTACTTAGAGAAAGAAGTTGAGAATCCCGAGCTTAAGAAGGAGAAGGAAGCCGCTAATGGCAGGAGTGGAGGTTTCAAATCAGAAGAGAAAGGGTATAGTAGGAGTTCCAGGCATAAGGATGATCATGATGGTGATGATGATAATGATAATGATGTGGATCACCGCTCTAAGCATTCAAAATCTGGCGATGGTTCTCGTGGTGATTACGATAAGCACAAGGAAAGAGGCTCGTCGCGTCGTCACTCCCGGTCCAGAGATGGAAACAAGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAGGGACAGAGATGATGAGGACAAGTATGGAAGGGAGCGAGACAGAGAACGTGACCGTGAAAGGGACAGGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCGTAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGTCGTGACAGGGAGCATAGAGACAGTGAAAGGAGCCGGGATAAGGATTACAGAGACAGGGAAAGGGCAAGGGAATCCAGGGAACGGGATAGAGAAAGCAGAAGACATAAAGAGAAAAAGGAAGAGGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCGGGCAAGGTGCGAGATGTTCGGTTAATTATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCCCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCTGCAATGGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAATCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAGTGA 1632 0.4602 MMDFDEYEYLEKEVENPELKKEKEAANGRSGGFKSEEKGYSRSSRHKDDHDGDDDNDNDVDHRSKHSKSGDGSRGDYDKHKERGSSRRHSRSRDGNKEKDEHRSSRSSRDGKRDRDRDDEDKYGRERDRERDRERDREKESSRRSRSQSERRKSDPDDRERERSRDREHRDSERSRDKDYRDRERARESRERDRESRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPAMVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKESDFDLDIKEDVEAECSKFGKLKHIFVDK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03528 543 SUPERFAMILY RNA-binding domain, RBD 318 411 IPR035979 GO:0003676
Aip09g03528 543 TIGRFAM SF-CC1: splicing factor, CC1-like family 108 543 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aip09g03528 543 MobiDBLite consensus disorder prediction 13 215 - -
Aip09g03528 543 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Aip09g03528 543 MobiDBLite consensus disorder prediction 1 215 - -
Aip09g03528 543 PANTHER CC1-LIKE SPLICING FACTOR 2 543 - -
Aip09g03528 543 SMART rrm1_1 323 395 IPR000504 GO:0003723
Aip09g03528 543 SMART rrm1_1 219 291 IPR000504 GO:0003723
Aip09g03528 543 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 287 IPR000504 GO:0003723
Aip09g03528 543 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 393 IPR000504 GO:0003723
Aip09g03528 543 Gene3D - 305 404 IPR012677 -
Aip09g03528 543 Gene3D - 153 304 IPR012677 -
Aip09g03528 543 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 413 518 IPR029123 -
Aip09g03528 543 Gene3D - 495 543 IPR012677 -
Aip09g03528 543 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Aip09g03528 543 CDD RRM1_RBM39_like 219 291 - -
Aip09g03528 543 CDD RRM3_RBM39_like 499 543 - -
Aip09g03528 543 Coils Coil 185 205 - -
Aip09g03528 543 SUPERFAMILY RNA-binding domain, RBD 213 301 IPR035979 GO:0003676
Aip09g03528 543 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03528 Aip-Chr9 141969889 141976398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03528 219 385 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 1.71e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03528 K13091 - gmx:100789839 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03528 09 141969889 141976398 Aip09g03528 09 141969889 141976398 ECH