Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03521 ATGGAATACAGAACTGTATCTGGAGTCGCTGGACCGTTGGTTATCCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGGAGTACTCGTCGTGGACAAGTTCTGGAGGTTGATGGCGAAAAGGCTGTGGTTCAGGTTTTTGAAGGTACATCTGGAATCGACAATAAATTTACAACAGTGCAATTTACTGGAGAGGTGTTGAAAACTCCCGTCTCACTAGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGCCCACCAATATTACCCGAAGCTTACTTGGACATATCAGGAAGTTCTATCAATCCTAGTGAGAGAACCTATCCTGAAGAAATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCCCTGTTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATTTGCCGTCAGGCTGGCTTAGTCAAGCGATTGGAGAAAACAGATAATCTTCTTGAGCATGGAGGAGAAGATGACAATTTTGCTATTGTGTTTGCTGCTATGGGAGTTAACATGGAGACTGCACAATTTTTTAAACGTGACTTTGAGGAAAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCCTATGAGTGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCAGAGAAGAGGTACCAGGAAGACGTGGTTATCCGGGTTACATGTATACCGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGTCGGAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATCACTGAGGGACAGATTTACATTGACAGGCAGTTGCATAACAGACAGCAGATATACCCACCAATCAATGTGCTTCCATCACTATCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTATATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCCGAGGATCTGCTGTATCTGGAATTCTTGGACAAATTTGAGAAGAAGTTTGTCACCCAGGGAGCCTATGACACTCGCAATATCTTCCAGTCCCTAGATCTCGCATGGACTTTGCTGCGGATCTTCCCCCGAGAGCTTCTTCATCGTATTCCAGCCAAGACCCTCGATGCTTATTACAGCCGTGATGCCGAAGTCCATATTTCTCTCTAG 1431 0.4319 MEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEHGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAYYSRDAEVHISL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03521 476 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 129 361 IPR000194 GO:0005524
Aip09g03521 476 Gene3D - 11 473 - -
Aip09g03521 476 CDD V_A-ATPase_B 74 363 - -
Aip09g03521 476 Pfam ATP synthase alpha/beta family, beta-barrel domain 6 72 IPR004100 GO:0046034|GO:1902600
Aip09g03521 476 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 2 471 IPR005723 GO:0033180|GO:0046961|GO:1902600
Aip09g03521 476 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 1 470 IPR022879 -
Aip09g03521 476 CDD ATP-synt_V_A-type_beta_C 371 465 - -
Aip09g03521 476 PIRSF V-ATPsynth_beta/V-ATPase_B 1 475 IPR022879 -
Aip09g03521 476 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 1 470 - -
Aip09g03521 476 CDD ATP-synt_V_A-type_beta_N 2 73 - -
Aip09g03521 476 ProSitePatterns ATP synthase alpha and beta subunits signature. 352 361 IPR020003 GO:0005524
Aip09g03521 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 367 IPR027417 -
Aip09g03521 476 Hamap V-type ATP synthase beta chain [atpB]. 1 470 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03521 Aip-Chr9 141898662 141902477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03521 1 469 Primary Pumps ATPases(2) AT4G38510 97.228 0.0 935
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03521 K02147 - han:110941202 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03521 09 141898662 141902477 Aip09g03521 09 141898662 141902477 ECH