LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g03505	ATGCAATCTATCCGAAAATCGTTCAAGTCCTATGCTTCCTATAACAAACGTTCAAGAAGGTTTGCCGCGTCGGGAGGACCCGATTCTAGCCACGAGCACCTTCCAATCCTTCAAGACCAGGAATCTCATCACCATCATCGTCACCAACACCACCATTCTGACCCTCCTCCGTTATCTTCCATGGCCGGCGACTACGTCGTCAAGATCAATGACGGCGGCGATCCTGCCGGAGGAAACAAGATTTGGAGGGGTTCCAGCTACGATTTCTGGCCCGAAGATGCAAGTTCCGGCGACAATGCCGACGCCAAAGAGGAGAGCTTTGATTTCCGCCAATCTGGTGCGCCGCCGGTGCCGGAGGAGGACCCGCCGTCGCAGCTGATCGGAAGTTTCCTGCGCAAACAGATAGCTTCCGGTGAGATCTCGTTGGACATGGACATGGAGATGGAGGAGCTTCAGCGCAACTACGACGCCGGTGCAAGTACCGCCGCTGCCGCAGGAGGGAAGCTTTCGCCGGTGGAGGAGTCGCCGACGACGAGCATGAACAACCGCGTATCCAAGGAGCTCAAGGTTTCGTTCGAGGAACCCGCGCCACCGAATTTGATGGCTGATATGCCTAATAGCTCCGATGCCATCAGAAGAAGACACAGCAGGGACTTGCCGTCGACTGGAGATTTCCATCGGCCGCCGCATCCGCCGCACCACAGCAGGGAATTGCCGTCTCGGAGCGGCCAAAGTGGTGATGGCGAGGTTGTGAGGTGCACCTCTAACGGTTCCATAGAGAGAACTCTTTCCATGCAGAGCAGAAAATCAACATTGTTGAAGGCTAAAACCCGGTCCAGGTTGCTGGACCCACCAGAAGAACCCGAAAGAAAATCGGGTCGGATTGCCAAGTCGGGTCAGTTGTTCTCAGGGTTGCTTGGCAAGAAGAGTGGTGGTGATGACGATGATGAAGATGATCCATTTTTGGAAGAGGATCTTCCTGATAAGTATAAAAAATCTCAGTTTAGTATATGGGTTTTACTTCAATGGGTGGGGTTGATTTTGATCATTGCTGCATTGATTACAACTCTGAGTGTTCCTTTCTTGAGGGAGAAGAATCTTTGGCAGCTGAAGCTGTGGAAATGGGAGGTTATGATTCTTGTGTTGATATGTGGAAGGTTGGTATCTGGTTGGCTTATCAGAATAGCTGTGTTCTGCATTGAGAGAAACTTCCTTTTGAGGAAGAGAGTTCTGTATTTTGTGTATGGTGTGAAGCATGCTGTTCAGAATTGTGTTTGGTTAGGGCTTGTTTTGATAGCTTGGCACTTCTTGTTTGATCAGAAAGTTCAGAGAGAGGTTCATAGTAATTTTCTTGAGTATATTACCAAGTTTTTGGTGTGCTTGTTGGTTGGTACTCTGGTTTGGTTGGTGAAAACCCTTATGGTTAAGGTTCTGGCCTCTAGTTTCCATGTTAGCACATATTTTGATAGGATTCAAGAGTCACTGTTTAATCAGTTTGTTATTGAGACACTCTCCGGGCCGCCTTTGGTCGAGCTTCAGCGATATGAGGATGAGGAGCAAAGGATTCTTGAAGATGTCGAGAAGCTACAGAAAGCCGGAGTTACCATACCTCCTGACCTGAGGGCTACTGCCTTCGCGACCAACAAGAGTGGGAAGTTGAGGAGTGGGATGCTCCAGAAAAGCCCCAGGATGGTAAGTGGACGGTTCTCAAGACCTCTCTCTAAGAAGTCAGAAGATGGGAATAGTGGGATAACTATTGATCACCTGCATAAGCTGAATCCGAACAATGTCTCGGCTTGGAATATGAAAAGGCTGATCAATATGGTTCGGCATGGAGCTCTAACTACATTGGATGAACAGATACTTAACTCGACCAATGATGATGAGAATGCCACAGAGATTAGAAGTGAAAATCAGGCAAAAGGAGCAGCCAAGAAAATTTTTCAGAATGTTGCTTGTGGTAGCAGGTTCATATACAAGAAGGACTTACAGCGATTTATGCAAGAAGATGAAGTTGTGAAAACCTTGAGTCTCTTTGAAGGTGCATCCGAGACCGGAAGAATAAGCAAAGCATCCTTGAAGAACTGGGTGGTCAATGCCTTTAGAGAGAGGAGAGCACTCGCCTTGACATTGAATGATACGAAAACGGCGGTGAACAAGCTTCATCGAATGCTTAATTTCTTAGTTGCAATTATTATCCTAGTTATCTTTCTCTTGATAATGGGAATTGCCACCTCCAAATTTCTCCTCTTCGTGAGCTCACAGCTTGTCTTGGTTGCATTCATATTTGGAAATACCTGCAAGACCATATTTGAAGCCATTATTTTCTTATTTGTAATGCACCCGTTTGACGTTGGAGACAGATGCGAAATTGAAGGGGTCCAGATGGTCGTGGAAGAAATGAACATATTGAACACCATATTTCTGAGATATGATAATCTAAAGGTAATGATCCCTAACAGTGTCCTTGCTACAAAGGCCATAAACAACTTCTACCGCAGTCCTGACATGGGAGATTCTGTTGAATTCCTTATTCATGTGTCTACACCAATGGAAAAGTTTACTCAAATGAAACACAGAATACAGAGTTACATTGATAACAAGAAGGAGCACTGGTATCCATCACCATTTATAGTCTTCAAGGATTGTGAACTCTTAAACATGGTTCGCATTGCGGTTTGGCCAACACACAGGATGAACTTCCAAGACATGGGAGAGAGATTCATAAGGAGGTCGTTGTTGCTCGACGAGATGATCAAGATTTTCCGGGAGCTTGACATACAGTACCGACTGCAGCCGCTCGATATTAGTATTAGAAGCATGCCTACCACTTCTGAGCGTCTTCCACCAAGTTGGTCAACAATCACAAGTTGA	2874	0.4631	MQSIRKSFKSYASYNKRSRRFAASGGPDSSHEHLPILQDQESHHHHRHQHHHSDPPPLSSMAGDYVVKINDGGDPAGGNKIWRGSSYDFWPEDASSGDNADAKEESFDFRQSGAPPVPEEDPPSQLIGSFLRKQIASGEISLDMDMEMEELQRNYDAGASTAAAAGGKLSPVEESPTTSMNNRVSKELKVSFEEPAPPNLMADMPNSSDAIRRRHSRDLPSTGDFHRPPHPPHHSRELPSRSGQSGDGEVVRCTSNGSIERTLSMQSRKSTLLKAKTRSRLLDPPEEPERKSGRIAKSGQLFSGLLGKKSGGDDDDEDDPFLEEDLPDKYKKSQFSIWVLLQWVGLILIIAALITTLSVPFLREKNLWQLKLWKWEVMILVLICGRLVSGWLIRIAVFCIERNFLLRKRVLYFVYGVKHAVQNCVWLGLVLIAWHFLFDQKVQREVHSNFLEYITKFLVCLLVGTLVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVELQRYEDEEQRILEDVEKLQKAGVTIPPDLRATAFATNKSGKLRSGMLQKSPRMVSGRFSRPLSKKSEDGNSGITIDHLHKLNPNNVSAWNMKRLINMVRHGALTTLDEQILNSTNDDENATEIRSENQAKGAAKKIFQNVACGSRFIYKKDLQRFMQEDEVVKTLSLFEGASETGRISKASLKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIFLLIMGIATSKFLLFVSSQLVLVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIEGVQMVVEEMNILNTIFLRYDNLKVMIPNSVLATKAINNFYRSPDMGDSVEFLIHVSTPMEKFTQMKHRIQSYIDNKKEHWYPSPFIVFKDCELLNMVRIAVWPTHRMNFQDMGERFIRRSLLLDEMIKIFRELDIQYRLQPLDISIRSMPTTSERLPPSWSTITS	957

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip09g03505	957	MobiDBLite	consensus disorder prediction	19	123	-	-
	Aip09g03505	957	MobiDBLite	consensus disorder prediction	238	272	-	-
	Aip09g03505	957	Coils	Coil	512	532	-	-
	Aip09g03505	957	MobiDBLite	consensus disorder prediction	279	294	-	-
	Aip09g03505	957	PIRSF	Memb_At2g17000	36	957	IPR016688	-
	Aip09g03505	957	Gene3D	-	782	831	IPR023408	-
	Aip09g03505	957	MobiDBLite	consensus disorder prediction	303	322	-	-
	Aip09g03505	957	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	4	954	IPR016688	-
	Aip09g03505	957	SUPERFAMILY	Sm-like ribonucleoproteins	772	831	IPR010920	-
	Aip09g03505	957	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN	4	954	-	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g03505	Aip-Chr9	141762429	141767098	Dispersed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g03505	70	957	Mechanosensitive Ion Channel Family	AT1G78610	55.761	0.0	916

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g03505	K22048		-	gmx:102665658	1290.4

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip09g03505	09	141762429	141767098	Aip09g03505	09	141762429	141767098	ECH

Showing 1 to 1 of 1 entries