Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03495 ATGGAGAACGACACCGCCGCCACCAACACCAACGGCAGCGCCACCGCCACCGCCAAACTCGCAATTGCCGGTGGGAAATCAAACAGCCACAACGAGGAAGAGGACCGCACCAATTTCAACAACGGCGTGGAGGAGCACATGGCGGAGCAAGTGGATGAAGAAGAAGAGGAAGAAGCAGAAGCAGAAGAAGACGGTGACGGTGGCGAAGGCGGTGAAGGGGAACAAACTGGATCTGCTTCTCGGCAACCTTCGAGAACCCCTTTCACCAATCTCAGCCAGGTCGATGCTGACCTTGCCCTTGCCCGAACCCTTCAGGAACAGGAAAGGGCATACATGATGCTTAGAATGAATAATGAAGGAAGTGACTATGGAAGTTGGGAAGCTGGGAGTTATTTGCATGATGATGGAGATGATTTTGATGATCTGCATGATGGAACTGATCTGGATGAAGACGATGAGGACGACGATGATGATGACGAGGAGGATTATGAGAATGAAGATGAAGATGCATTTGATGTCCATGCTCATGATGATGCTGGAGAACATGATAATCCTAGCATTGAATTTGATCCAGATGTATTTTCAAGTGATGAAGCCTATGCAAGGGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTCCTGGCACTTGCTGGGATAAATGACCGCGAGGCTGGGGAAGCAGAGGAGCATGGTGCTAATTCTCAGGATGCATGGGAAGATGTTGATCCAGATGAACTTTCATATGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCGGTCTGCCATCAATCAAGTACAAGACTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATCTGTCGGATGGACTATGAGGACGACGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATCAATAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCTTCCGGGAGCAGCTAG 1035 0.485 MENDTAATNTNGSATATAKLAIAGGKSNSHNEEEDRTNFNNGVEEHMAEQVDEEEEEEAEAEEDGDGGEGGEGEQTGSASRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFDDLHDGTDLDEDDEDDDDDDEEDYENEDEDAFDVHAHDDAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAGEAEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLAGLPSIKYKTGSDQHGSNDSCVICRMDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03495 344 MobiDBLite consensus disorder prediction 140 168 - -
Aip09g03495 344 MobiDBLite consensus disorder prediction 75 93 - -
Aip09g03495 344 MobiDBLite consensus disorder prediction 169 188 - -
Aip09g03495 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 343 - -
Aip09g03495 344 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Aip09g03495 344 Coils Coil 44 64 - -
Aip09g03495 344 MobiDBLite consensus disorder prediction 28 42 - -
Aip09g03495 344 Pfam Ring finger domain 292 334 IPR001841 -
Aip09g03495 344 SMART ring_2 294 334 IPR001841 -
Aip09g03495 344 MobiDBLite consensus disorder prediction 119 192 - -
Aip09g03495 344 MobiDBLite consensus disorder prediction 48 70 - -
Aip09g03495 344 CDD RING-H2_PA-TM-RING 294 334 - -
Aip09g03495 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 343 IPR043312 -
Aip09g03495 344 MobiDBLite consensus disorder prediction 1 17 - -
Aip09g03495 344 SUPERFAMILY RING/U-box 285 339 - -
Aip09g03495 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 341 IPR013083 -
Aip09g03495 344 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03495 Aip-Chr9 141620990 141624339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03495 84 238 C3H Transcription Factor Family AT3G19910 54.839 8.34e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03495 K19045 - gmx:100787418 448.358