Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03479 ATGATCGGTTTAGTCACGGGTCTTACACTTGTCGGCGTTCTCGCTAAAGGAAAAAGCAGCTTCTGCTTCTGCGTTTGGATCCGAATCACTTCCTCTCGGGTTGCCGAGGATTGTGGTGACTGCGTCGAGAGCATTGTTCTTCGCGCCATGAGCAACAGGAGAGGAGACACTTCTCAAATTCTCGAGGGGTTAGGGTTTTCCTCCGCACCAACAACAATGAACGGTGCCGGATCGGGATCCTCGAACCTCTGCATAAACGACACTCTCACTGACGACGAGCTTCGTTCGATCCTGGCGAAGCTGGAGAGCGAGAAGGACAAGGAGATCTTCGGGTTGGTGTGTAAGAGGTGGCTCCGATTGCAGAGCACCGAAAGGAAGAAGCTTGCGGCGCGTGCAGGTCCACACATGCTTCGCAGAATGGCTGATAGGTTCACGCGCTTGCTCGAATTGGACCTTGCCCAGTCCGTTTCGCGGTCGTTCTATCCCGGCGTCACCGATTCCGACCTCGCCGTCATCGCCAATGGTTTCACATGCTTGAGGGTCCTCAATTTGCATAATTGTAAAGCGACTTACGGGTATTGCATCTCGCCGGTTGCAGATTCGTTACGGATGATCAAGTATTTGGACATCAACAAATGCAGTAATGTCAGCGATGTTGGTGTCTCTAGTGTTTCTAGGGCTTGTTCATCATCTCTCAAGACGTTGAAGTTGTTGGATTGCTACAAAATTGGGGATGAAACCATATTATCCTTGTCCAAATACTGCGATAATCTTGAGACTCTAATCATTGGTGGTTGCCGGGATGTCTCCAACGACGCAATAAAATCTCTTGCTGCTGCAGAAACCTTGAGGCACTGGACATTGGTTGCTGTGAGGAGCTCCCATCTCCGCCGCACCGGAAAGCGAACCATGTCGGAGTCACCGTCTCAGCCACCGCCTCCTCCTCCAGCTCCCGAAGCGCCATCGTACTGGTGTTACCACTGCGAGAAGCGCGTCTCCGTCGAGACACTCCCTGACCTACCTGACGTCATCTGCGGTGACTGCAAGAACGGCTTCGTCGAGTCCATCCCCACTCCCTCTCTCCCTTCCTCCGCTGCCGCCGCCTCCTCCTCCGACGACCCCTACTTCGGCTCTCACTTCCTCCACGTCCTCCGCCTAATCGCCCAGTCAGCGCGTGACGACGACGCGTCTCCTCCTCCTCCGCCTAGTCGCTCGCCGGAAAACGATTTCCTCCGGATCGAGCTCGGAGGCTGGGACAACGACGACGACGAGGATGACGATGACGACGAGGAAAACGGCATCGAGTTCCACCACGGAGGCGAAGACCGCGAAAACGCAGTCGAGGAGCGAGGAGATCGAGTCGGAAACGAGGAACCGCACGGCGACGACGAAGATCTGCGGCGGAGGAGGCGCGAGCTGCTTCGTCTCCGAATTAGGGATTTGGCGACGCGAACGAGGAGTATGCGGAACCGGATCTTGGATTGGGCCGACATCCTGATGGGCCTTGAGGACAACTCCATCGAGTTCCGCCTCCAGCTGCCGGATTCCGATCGCTACGTCGGAAACCCTGAGGACTACGTCGACGCGGCGGAGTATGAGGCCTTGCTGCAGACGCTGGCGGAGAGCGACGGGGGAGGGAGGAGGGGAGCTCCGCCGGCGGCGAAGTCTGCCGTGGAGGCGCTGCCGACAGTGAAGATCTCGTCGGAGAGCGAGGTGGTGGCGTGCGCCGTATGCAAGGACATGGTGGGCGTCGGTGACGTGGCAAAGAGGTTGCCGTGCGGGCACGAGTACCATGGAGACTGCATTGTGCCGTGGTTAGGTTCTCGAAATTCGTGCCCTGTTTGCAGGTTTGAGCTGCCAACTGATGATAGAGATTATGAAGCGGACAAGAGGAAGAACAAGAGAGTCTTCAATTCTGCTAACGGTGCTTCTGGTTCAGGTGGCGGTGGCGGTGGAGGTGGCACCTTCTCTGGTTGA 1977 0.567 MIGLVTGLTLVGVLAKGKSSFCFCVWIRITSSRVAEDCGDCVESIVLRAMSNRRGDTSQILEGLGFSSAPTTMNGAGSGSSNLCINDTLTDDELRSILAKLESEKDKEIFGLVCKRWLRLQSTERKKLAARAGPHMLRRMADRFTRLLELDLAQSVSRSFYPGVTDSDLAVIANGFTCLRVLNLHNCKATYGYCISPVADSLRMIKYLDINKCSNVSDVGVSSVSRACSSSLKTLKLLDCYKIGDETILSLSKYCDNLETLIIGGCRDVSNDAIKSLAAAETLRHWTLVAVRSSHLRRTGKRTMSESPSQPPPPPPAPEAPSYWCYHCEKRVSVETLPDLPDVICGDCKNGFVESIPTPSLPSSAAAASSSDDPYFGSHFLHVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDDEDDDDDEENGIEFHHGGEDRENAVEERGDRVGNEEPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWADILMGLEDNSIEFRLQLPDSDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPAAKSAVEALPTVKISSESEVVACAVCKDMVGVGDVAKRLPCGHEYHGDCIVPWLGSRNSCPVCRFELPTDDRDYEADKRKNKRVFNSANGASGSGGGGGGGGTFSG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03479 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 543 622 IPR013083 -
Aip09g03479 658 SMART LRR_CC_2 255 280 IPR006553 -
Aip09g03479 658 SMART LRR_CC_2 202 227 IPR006553 -
Aip09g03479 658 SMART LRR_CC_2 229 254 IPR006553 -
Aip09g03479 658 SUPERFAMILY RING/U-box 570 622 - -
Aip09g03479 658 MobiDBLite consensus disorder prediction 297 318 - -
Aip09g03479 658 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 337 649 - -
Aip09g03479 658 MobiDBLite consensus disorder prediction 418 432 - -
Aip09g03479 658 MobiDBLite consensus disorder prediction 637 658 - -
Aip09g03479 658 SUPERFAMILY RNI-like 142 284 - -
Aip09g03479 658 Pfam zinc-ribbon 322 356 IPR039525 GO:0061630
Aip09g03479 658 SMART ring_2 575 615 IPR001841 -
Aip09g03479 658 MobiDBLite consensus disorder prediction 433 465 - -
Aip09g03479 658 ProSiteProfiles Zinc finger RING-type profile. 575 616 IPR001841 -
Aip09g03479 658 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 337 649 - -
Aip09g03479 658 Gene3D Ribonuclease Inhibitor 82 305 IPR032675 -
Aip09g03479 658 Pfam Ring finger domain 575 616 IPR001841 -
Aip09g03479 658 MobiDBLite consensus disorder prediction 392 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03479 Aip-Chr9 141488473 141493047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03479 486 632 C3H Transcription Factor Family AT5G01980 46.104 3.51e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03479 - - adu:107467499 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03479 09 141488473 141493047 Aip09g03479 09 141488473 141493047 ECH