Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03463 ATGCCCGACAATGGAGACCATATCCATGATTTTGTCAACTCAACTTGGAGATTTTGTTCTTCTTTAGGTGGTTGGATTTCGGGTTTAATATTGAAACCTTGCAAAAAAGTGGTTGGCATAGTATTTACTAGTTCTCTTTCTAGGTTGGCTGACGGAAAAGACAATTGTTATCCTGAGTTCATGGATGAATGTATATATATTAGCTCATCAGATGATGACCTTGAGGAGATAGAAGATCCAAAGAGGAGTCTCCCTCAATGGGCTACTGCTGAAAGGAATTCAGATTATGGTGGACGGCCAAGGCACGATAGTTTTTCAAGAGGCGCAAGTACTTCAGGTTCTAGCTCTTCCAATGTTAATAATAATCATTCCCAAATCAAGCTTCATGCTCAACCTGTATCTAGCAAAAATGGACTGAATCAGAGAGTTGCACGTCGAGAAGAACCTTCATATCATGCACAGAATGGAAACACAAGTCAGTCAACTCAACAGGCTTTCAAGCGGGCTCTTCCTCAAACTGTTCATCCATATACATCAAGGGTTCCACCATCTTCGTCGTTTGCACCTGATAGCAGATTAAGTAACTTAAAGGATAACATGAACAATAGTCAGTTTTTTGATACATATAGGAATCGTCCCCATGGAGTAGGACCTAGCACGATGAACGACAAGGCCTACAACCGTGGCCCATTTATGAGGGGCAGTGATGAAGATCGCTTCATGCATCAAAATGGTGTGATTAGGGTTCTTCCTCCATCTTTGATGCATGGTAAGTCTGTACCTCCACAGTATGCTAGTTCCAGTGAACCTGCATTCCGCTCTGGTGCAGGTGATGAACGGGCTCCTGGAAGTGATGAGAGACTAATTTATGAGGCCATTGTGGAGGATCTCAGTCAAAATAGAGTAGAAGTTGATGTACCTGATGGTCACATGTGTGTCTCTCTTCTTAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGGATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTCACTGCAATCAAAATCTAAAACAGACGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGACGATGAGGATGATCGTGCTACTGTTGATTTGGAAAAGCTTGAAAATAAAGAAGAATCTGATGATGTAAAACCAAGTACAGAACCTAGTAGTTCAACACGAGCACCAAGTAGGAAAAGGCCGGCTGCTGGAACACTTGTTGTTTGCCCTGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAGACTTGCTGTTTTGGTTTATCACGGGGGAAGTAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTCCTCACAACATATGCTATTGTGACTAATGAAGTTCCAAAGCAGCCGTTGGTTGAGGAGGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGATATCCTCTGAATTTTCTGCCAGTAAAAAGAGGAAGCAGTTATATAATGGAAGTAAGAAAAGTAAAAGGGGTAGAAAGGGATTAGACGAATCTTCAATTGAATCTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGTCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACACCAATTCAAAATACAATCGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCGTTCTACAATACAATAAAAGTTCCGATATCCAGAAATTCTATCCAAGGGTACAAGAAGCTTCAGGCAGTTCTGAGGGCCATTATGCTTCGCCGTACAAAAGGAACTTTGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTGAGCTGACTAAGGTGGATTTCTCCACTGAGGAGCGGGCCTTCTATATGCAGTTGGAAGCAGATTCACGTTCCCAATTTAAGGCCTATGCTGCCGCTGGCACGGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTGCGTCTTCGTCAAGCTTGTGATCACCCACGTCTTGTTAAAGATTATTATTCTGATCCTCTTGGGAAATCCTCTGTGGAAATGGCAAACTCACTTCCAAAGGAGATGTTGATTAATCTGTTTAATAGTTTGGAAACGACCTTTGCTATATGCTGTACTTGTGAGGATCCACCTGAAGACGCAGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGGCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAGTGAGTACAGTTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCATTCAAATTGTAAACTGAATAGTCGTAGCTCTGGTTTACTAAATTCTGGTGGAAGCCATAGAGGTTCGCCATCTGATGATGATTTATATATTGAAGATTGCGACTCAGATGTTAGGATTATGAAAAACACAAGAAAATATTCAGACTCCACAACTGTAGGACCAATAAAAGCTATAGTCTTTTCCCAATGGACTAGCATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCTGTATGAAATATAGGAGACTTGATGGGCGGATGTCTCTGATTGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGCTTACTGTAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATCTGCTTTTGGGGAAGAACATGCTGGCAGTTCTGCGACTCGCCTTACAATGGATGATCTGAAATATCTTTTCATGGTGTAG 3204 0.4129 MPDNGDHIHDFVNSTWRFCSSLGGWISGLILKPCKKVVGIVFTSSLSRLADGKDNCYPEFMDECIYISSSDDDLEEIEDPKRSLPQWATAERNSDYGGRPRHDSFSRGASTSGSSSSNVNNNHSQIKLHAQPVSSKNGLNQRVARREEPSYHAQNGNTSQSTQQAFKRALPQTVHPYTSRVPPSSSFAPDSRLSNLKDNMNNSQFFDTYRNRPHGVGPSTMNDKAYNRGPFMRGSDEDRFMHQNGVIRVLPPSLMHGKSVPPQYASSSEPAFRSGAGDERAPGSDERLIYEAIVEDLSQNRVEVDVPDGHMCVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRSLQSKSKTDDACNHKTEALNLDDEDDRATVDLEKLENKEESDDVKPSTEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELKEKVVEEQRLAVLVYHGGSRTKDPTELARYDVVLTTYAIVTNEVPKQPLVEEDDIDEKMGERFGISSEFSASKKRKQLYNGSKKSKRGRKGLDESSIESASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIELTKVDFSTEERAFYMQLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYYSDPLGKSSVEMANSLPKEMLINLFNSLETTFAICCTCEDPPEDAVVTMCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLADELGGSNSIKAHDFDHSLVQQSEYSSSKIKAVLEILHSNCKLNSRSSGLLNSGGSHRGSPSDDDLYIEDCDSDVRIMKNTRKYSDSTTVGPIKAIVFSQWTSMLDLVEASLQQSCMKYRRLDGRMSLIARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEEHAGSSATRLTMDDLKYLFMV 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03463 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1066 IPR027417 -
Aip09g03463 1067 Gene3D - 412 501 IPR038718 -
Aip09g03463 1067 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 85 1066 - -
Aip09g03463 1067 SUPERFAMILY RING/U-box 758 807 - -
Aip09g03463 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 330 607 IPR014001 -
Aip09g03463 1067 MobiDBLite consensus disorder prediction 257 282 - -
Aip09g03463 1067 MobiDBLite consensus disorder prediction 151 167 - -
Aip09g03463 1067 MobiDBLite consensus disorder prediction 105 140 - -
Aip09g03463 1067 MobiDBLite consensus disorder prediction 519 539 - -
Aip09g03463 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 645 IPR027417 -
Aip09g03463 1067 MobiDBLite consensus disorder prediction 207 228 - -
Aip09g03463 1067 Gene3D - 511 656 IPR038718 -
Aip09g03463 1067 CDD SF2_C_SNF 914 1019 - -
Aip09g03463 1067 Pfam Helicase conserved C-terminal domain 914 1009 IPR001650 -
Aip09g03463 1067 MobiDBLite consensus disorder prediction 394 424 - -
Aip09g03463 1067 CDD DEXDc_SHPRH-like 315 645 - -
Aip09g03463 1067 Coils Coil 379 399 - -
Aip09g03463 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 811 IPR013083 -
Aip09g03463 1067 SMART helicmild6 926 1009 IPR001650 -
Aip09g03463 1067 SMART ultradead3 311 624 IPR014001 -
Aip09g03463 1067 Pfam Zinc finger, C3HC4 type (RING finger) 761 797 IPR018957 GO:0046872
Aip09g03463 1067 ProSiteProfiles Zinc finger RING-type profile. 761 797 IPR001841 -
Aip09g03463 1067 ProSitePatterns Zinc finger RING-type signature. 776 785 IPR017907 -
Aip09g03463 1067 MobiDBLite consensus disorder prediction 76 167 - -
Aip09g03463 1067 Pfam SNF2-related domain 318 723 IPR000330 GO:0005524|GO:0140658
Aip09g03463 1067 Gene3D - 660 1066 IPR027417 -
Aip09g03463 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 883 1062 IPR001650 -
Aip09g03463 1067 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 85 1066 - -
Aip09g03463 1067 Gene3D - 285 378 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03463 Aip-Chr9 141279276 141287431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03463 61 967 RAD5 or RAD16-like Gene Family AT1G50410 54.439 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip09g03463 SNF2_N 1.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03463 - - lang:109335781 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03463 09 141279276 141287431 Aip09g03463 09 141279276 141287431 ECH