Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03459 ATGAAACCACGAACCAGTGAAAGTGAAGAAGAAAGTGGAAAATTGGGAGAGGGAAGCAGCACATCGCAGGGGCAGAGAGTCGACGCAGTTGAATCTCGATCCTCGTCGGTTATTGTTCGCGGCAGCGATGGCAGCGGTTTCGTCAAATGCCCAGATTGCGGCAAGGACGTTCCTGCTCTACTTATCAGCATGCATGGTTGCAGCGACGAAGCCAAAACTAAAATGAATCTCGAGACACAACTTGTGGAACGGCCTTATGAAGCTAAGAGACCAGTGAGGAAGAATCCAAGATTTATTGTACCAAAGGCTAAAAGGGCCAAAGTTGAGAAGACGAAGAAGGTGAAAGATACAGACGTGCCAAAGAAGCCTCCATCATCCTTCTTTCTCTTCATGGATGATTTTAGGGAATCTTTTAAGGAGGCGAACCCTGATTCAAAGGATGATAACAGGGTTCGTAAAGAGGCTCGTGACAAATGGAGGTCCATGACTGATGAAGAGAAGAAGCCTTATTCTGATAAATTTGCTGAACTTAAAGTGGAATATGAGAAGGCTATGGAAATTTACAATGCTGCTAAAGCAGGAGAAGAGGGAGAAGGTGAAGGAGAGCATGAAGAGGGGGCTGATGAACAATCTGATAAAAAAGCAGCTGCTGCAGGTGAAGAGGGAGAAGGTGAAGGAGAGCATGAAGAGGGGGCTGATGAACAATCTGATAAAGAAGAAGCTGCTGCAGGTGAAGAGGAGGAGCTGACTGATGAGGATTAA 762 0.4606 MKPRTSESEEESGKLGEGSSTSQGQRVDAVESRSSSVIVRGSDGSGFVKCPDCGKDVPALLISMHGCSDEAKTKMNLETQLVERPYEAKRPVRKNPRFIVPKAKRAKVEKTKKVKDTDVPKKPPSSFFLFMDDFRESFKEANPDSKDDNRVRKEARDKWRSMTDEEKKPYSDKFAELKVEYEKAMEIYNAAKAGEEGEGEGEHEEGADEQSDKKAAAAGEEGEGEGEHEEGADEQSDKEEAAAGEEEELTDED 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03459 253 MobiDBLite consensus disorder prediction 15 38 - -
Aip09g03459 253 CDD HMGB-UBF_HMG-box 120 186 - -
Aip09g03459 253 MobiDBLite consensus disorder prediction 93 122 - -
Aip09g03459 253 MobiDBLite consensus disorder prediction 190 253 - -
Aip09g03459 253 MobiDBLite consensus disorder prediction 206 222 - -
Aip09g03459 253 MobiDBLite consensus disorder prediction 1 38 - -
Aip09g03459 253 MobiDBLite consensus disorder prediction 102 120 - -
Aip09g03459 253 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 120 189 IPR009071 -
Aip09g03459 253 Pfam HMG (high mobility group) box 120 189 IPR009071 -
Aip09g03459 253 Gene3D High mobility group box domain 103 201 IPR036910 -
Aip09g03459 253 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 22 211 - -
Aip09g03459 253 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 22 211 - -
Aip09g03459 253 MobiDBLite consensus disorder prediction 223 253 - -
Aip09g03459 253 SUPERFAMILY HMG-box 111 191 IPR036910 -
Aip09g03459 253 MobiDBLite consensus disorder prediction 138 172 - -
Aip09g03459 253 SMART hmgende2 119 190 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03459 Aip-Chr9 141217011 141218336 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aip09g03459 HMG_box 5.2e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03459 K25507 - aip:107619373 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03459 09 141217011 141218336 Aip09g03459 09 141217011 141218336 ECH