Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03455 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCTTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGATATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTTCTTAATAGGTTTAGGGATCATATAATTGAAGGTCAAGTTTATAGAATGACATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATAAATTCAAATTAGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATAAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGTTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTCAGTGGAAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTAGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGTTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAACCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGATCTTCAAGATAACAATGAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACGTAACTAATATGACTCCAAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCTCGATTATGATGCTGATGATGAGTCTACTCCAAAAAAGCCTGCTATTTTCCGAGGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAACATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCGTAGCTCACCAGAAAAAGAAACCCAGGAGGTGTTGTCCCACGTTATTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATGATGTTGTCACCTCCAAGGGCAAGAGGAATCTGAATCCCCAATTTGAAGAGGCGGCTGCTGATGCAGGCGTGGGTTCAAGATTGCCAAGGTTAATGAAGTTTGATTTAAGGTGTGGAATTGAGCTGCTGTGTCTAGGTGTAGGTTACATACTAGGATATGTAATCAGATCTTGGGATCCTCCTTATCATAGGTGA 1404 0.3853 MPPPFDMISKMHLPREAWRLKVRVLRLWVVPSFGNHDVPNSMDMILLDEHCGKIQATVKKPLLNRFRDHIIEGQVYRMTYFTVVSNHGSYRATSHKFKLVFLHRTTVVAVDKDVIPKTCFNMFPFSELLNMTQDYDFLVDVIGLLTSVEEEKEYAKEGKIVKMIVLELSSKDLTVRCALFRDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGLQNVMYATQMLFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEDLQDNNEGIYPQNGAYYCDFCLKHVTNMTPRRICDDPTIIAMFELLDYDADDESTPKKPAIFRGTEFASLINGEHGKHEKTPSNDTVSDDLSAELDILRSSPEKETQEVLSHVIDAPSQYGEKLIHENDVVTSKGKRNLNPQFEEAAADAGVGSRLPRLMKFDLRCGIELLCLGVGYILGYVIRSWDPPYHR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03455 467 CDD RPA1_DBD_B_like 140 239 - -
Aip09g03455 467 Gene3D - 114 248 IPR012340 -
Aip09g03455 467 SUPERFAMILY Nucleic acid-binding proteins 3 110 IPR012340 -
Aip09g03455 467 CDD RPA1_DBD_A_like 19 107 - -
Aip09g03455 467 SUPERFAMILY Nucleic acid-binding proteins 120 239 IPR012340 -
Aip09g03455 467 Pfam Domain of unknown function DUF223 44 135 IPR003871 -
Aip09g03455 467 PANTHER REPLICATION FACTOR A 1, RFA1 20 325 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g03455 467 Gene3D - 5 112 IPR012340 -
Aip09g03455 467 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03455 Aip-Chr9 141177173 141180382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03455 18 236 Core DNA Replication Machinery Family AT2G06510 26.957 1.74e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03455 - - aip:110269522 539.265