Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03449 ATGGAGGAGAAGCTCACCGATGCATATATATATCAAGGTCTCAAACTGCCGCTGGTTGCCGGGGTGGGGGACTGTCCCCTGCATGCAGGTAGGTCTGGCAACACGCCCCCCGCGTGGTGCAGCAGCAGCGTTGGAACTCCGCAGTCAACTCTGCTGCGCTTCACGGCCCTCCAAGTACCACGCCCCCTGCGTGGTGAGTGTACCACGCCCCCCTGCGTGGTGAGTCAGCACGCCCCCAACGTGTTGCAGGCGTGCTGCCACCTCGCTCTCCCGCTCAGCCACCACGCCCCCGGCATGTTGAGGTCTCGATTGTGGATAGTTACCATTTTGTTGTACACATGCATTTTGATCCCATTGATGCAACTCAAGAAGGCACTGTTTGGTTGTTACATGGCTTTTTTCTCTTGTAACACCATCAAAGGCATGTCCAAGGAGATTCAATTTCCAGAAATTTCTTCTCTGCCTGTGGCCAGGTTCCAGGATTTACAGTGTCTAAGAGAAGATGATGATGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGCTGTGAGCAAGCTTAGAAGGTGTAACCACATATTCCATCTTAATTGCATTCAGCAATGGATAGAGCGAAATCAATTCTCATGCCCACTTTGTAGGTCCTTTTTATTTTCTCATAATCTTCATGCTAAGAAATTCAATGAATACTAG 699 0.4993 MEEKLTDAYIYQGLKLPLVAGVGDCPLHAGRSGNTPPAWCSSSVGTPQSTLLRFTALQVPRPLRGECTTPPCVVSQHAPNVLQACCHLALPLSHHAPGMLRSRLWIVTILLYTCILIPLMQLKKALFGCYMAFFSCNTIKGMSKEIQFPEISSLPVARFQDLQCLREDDDETCSICLVEFEDEDAVSKLRRCNHIFHLNCIQQWIERNQFSCPLCRSFLFSHNLHAKKFNEY 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03449 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 223 IPR013083 -
Aip09g03449 232 Pfam Ring finger domain 172 216 IPR001841 -
Aip09g03449 232 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 100 220 - -
Aip09g03449 232 SUPERFAMILY RING/U-box 164 221 - -
Aip09g03449 232 ProSiteProfiles Zinc finger RING-type profile. 173 216 IPR001841 -
Aip09g03449 232 SMART ring_2 173 215 IPR001841 -
Aip09g03449 232 PANTHER RING ZINC FINGER PROTEIN-RELATED 100 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03449 Aip-Chr9 141108980 141110900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03449 101 221 C3H Transcription Factor Family AT4G38140 39.344 2.24e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03449 - - pvu:PHAVU_007G012000g 155.992