Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03411 ATGGTGTCGGTGCTGCCGTATGCAGATGTTGATTCCAGTTTGAGGGCCCTTGCTGGTTCCGCCGAGGGCTTCGGCCGCCACGCCATCGGTGGCCTCCACGGTTCTCTCTATATCGTCACCACCCTTTCAGACGATGGTCCAGGGTCCCTTCGCCAGGGGTGTCGTGAAAAGGAGCCACTGTGGATTGTTTTTGGAGTCTCCGGTACAATTCACCTTTCGTCGTACCTGAGTGTGTCATCTTACAAAACAATAGATGGCCGAGGGCAGAGGATAAAACTAACTGGAAAGGGCTTAAGGCTGAAAGAATGTGAGCACATAATTGTATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTCGACGGCATTCAGATAAAACCAAATTCCAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTACGATGATGGGCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCGCAGCATGACAAGACCATGCTGATCGGAGCTGATCCATCCCATGTTGGTGATAGGTGCATCCGGGTAACAATTCATCATTGTTTCTTCGATGGAACACGGCAAAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAACTACACCAGAAATTGGGCTATATATGCTATTTGTGCTAGCGTCGAATCTCAGATATACTCCCAGTGCAACATATATGAAGCAGGAGCTAAGAAGAAGACTTTTGAATTTTATACCGAGAAGGCGGCAGATAAGGAAGTGCCGAGGTCTGGAACTATTGTATCTGAAGGAGACATGCTTCTGAATGGTGCTCAACCATGCTTACTAACACGAAACAATGAAGAACCAATGTTCCATCCAAGTGAATACTATCCAACATGGACAATGGAATCAGCTGACCACTCTCTCAGAGAGATCCTCCAGTTGTGTTCAGGTTGGCAATCCATTGCTAGGCCAAAAGATAATCTGGTTCCCAATTAA 999 0.4615 MVSVLPYADVDSSLRALAGSAEGFGRHAIGGLHGSLYIVTTLSDDGPGSLRQGCREKEPLWIVFGVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWAIYAICASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEVPRSGTIVSEGDMLLNGAQPCLLTRNNEEPMFHPSEYYPTWTMESADHSLREILQLCSGWQSIARPKDNLVPN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03411 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Aip09g03411 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Aip09g03411 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Aip09g03411 332 SUPERFAMILY Pectin lyase-like 18 298 IPR011050 -
Aip09g03411 332 Pfam Pectate lyase 76 238 IPR002022 -
Aip09g03411 332 PANTHER PECTATE LYASE 18-RELATED 3 326 IPR045032 GO:0030570
Aip09g03411 332 PANTHER PECTATE LYASE 3 326 - -
Aip09g03411 332 Gene3D - 7 313 IPR012334 -
Aip09g03411 332 SMART amb_all 47 245 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03411 Aip-Chr9 140759624 140761719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03411 44 332 Polysaccharide Lyase AT3G55140 81.315 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03411 K01728 - gmx:100802068 612.453