Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03380 ATGGCATCAGCTTCTTGTGCCAGTAAGAGCCCGTTACCAATGAAAGATGCTGGAGTAGCTTCAGCTTCGGGGTATTATGTGTATCCTCCACCGCAAGCAAGCTACGAGGAGGTTGCAAACAATCCCAAGCTCTTCATGGAAACCTTGGAGAAGCTCCACTCTTCTATGGGCACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAATTAGATTTGCATCGACTCTTTGTTGAAGTAACTTCTAGAGGAGGTATTGAGAAGATAATCAAAGAGAGAAAATGGAAGGAAGTAACTGCAACTTTCAATTTTCCATCAACAGCTACAAATGCCTCTTTTGTTCTGCGGAAATACTATGCTTCATTGCTTTACCATTATGAACAAATCTACTATTTCAAAGCCCCTGGATGGAGTCCAGCTGCTTCCAGCTTTTTCTCTTCAGCAGGCGGTCTGCAGTGTCAATCATCCATTCCAGTTCCGGTGCAAAAGGCACAGTTTATGCCGCCGTCATCAGGATTTCAATCGCCGGTCTTCCAACAGTCGAGCGCTAATGCTGCTGAATTGCCTGAAGCCATGGGAAAATCTTCAGGAGGGTCTCAGGTGATTGGGGTCATTGATGGAAAGTTCGAAAGTGGCTATCTAGTTACTGTAACAATAGGTTCAGAGAAACTTAAAGGCGTCCTCTATCAGGCTCCACAAAAACCTGGATTGTCTACTTCTCATCACGGAGTCTTGGCCAACAACAGTGGCGCCTCTGCTCCGTTAGGTGTCCGTCGGCGCCGGCGCAGAAAGAAATCAGAAATAAAGCGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTACAATTTCTTTTTTGCGGAACAGCATGCAAGGCTAAAAGCACACCATCATGGGAAGGACAGGGAGATTAGTAGGATCATTGGCGAACTCTGGAACAAGTTGAATGAATCAGAAAGAGTAGTTTATCAAGAGAAGGCTCTGAAGGATAAAGAGAGGTATAGAGTGGAAATGGAGGATTATCGTGAGAAGCAGAAGATGGGCCAAGTTATTAGTGATGCTGTGCCTCTGCAGCAGCGGCTTCCTGAGGACATGAAATTGGATGAAACGGAGGGTGATTCTTTTCAAACACCAGAGGAAAGCAGTACTGGTGGAAGCGACTATGACGATGATAGAGCTATGGAAAAAGATTTTGATGAGGATGCATCACCGGTTGCCGGCATGGGTGCTGAATCTAGCTGCTTGGCCTCGGAGAAGTCACCCAATGGAGGTTTATGA 1278 0.4601 MASASCASKSPLPMKDAGVASASGYYVYPPPQASYEEVANNPKLFMETLEKLHSSMGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKERKWKEVTATFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAPGWSPAASSFFSSAGGLQCQSSIPVPVQKAQFMPPSSGFQSPVFQQSSANAAELPEAMGKSSGGSQVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQKPGLSTSHHGVLANNSGASAPLGVRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKAHHHGKDREISRIIGELWNKLNESERVVYQEKALKDKERYRVEMEDYREKQKMGQVISDAVPLQQRLPEDMKLDETEGDSFQTPEESSTGGSDYDDDRAMEKDFDEDASPVAGMGAESSCLASEKSPNGGL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03380 425 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Aip09g03380 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 409 - -
Aip09g03380 425 SUPERFAMILY ARID-like 34 135 IPR036431 GO:0003677
Aip09g03380 425 ProSiteProfiles ARID domain profile. 39 130 IPR001606 GO:0003677
Aip09g03380 425 CDD HMGB-UBF_HMG-box 275 339 - -
Aip09g03380 425 MobiDBLite consensus disorder prediction 255 269 - -
Aip09g03380 425 MobiDBLite consensus disorder prediction 365 425 - -
Aip09g03380 425 SMART bright_3 40 131 IPR001606 GO:0003677
Aip09g03380 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 275 342 IPR009071 -
Aip09g03380 425 SMART hmgende2 274 343 IPR009071 -
Aip09g03380 425 CDD ARID_HMGB9-like 41 126 IPR045303 GO:0003677
Aip09g03380 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 409 - -
Aip09g03380 425 SUPERFAMILY HMG-box 263 346 IPR036910 -
Aip09g03380 425 SMART ARID_2 36 126 - -
Aip09g03380 425 Gene3D High mobility group box domain 259 354 IPR036910 -
Aip09g03380 425 Gene3D - 32 135 IPR036431 GO:0003677
Aip09g03380 425 MobiDBLite consensus disorder prediction 238 282 - -
Aip09g03380 425 MobiDBLite consensus disorder prediction 385 402 - -
Aip09g03380 425 Coils Coil 324 344 - -
Aip09g03380 425 Pfam HMG (high mobility group) box 275 342 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03380 Aip-Chr9 140451561 140455119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03380 1 373 ARID Transcription Factor Family AT1G04880 60.677 3.51e-140 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip09g03380 ARID 5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03380 - - gmx:100783284 582.408