Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03379 ATGCCGGAGCTTCGTAGTGGAGTGCGACGTGGTCGCGCTGCGGTAGGCCAAAAGGGCTCGGAACCACCGGCACCGGCAAGGAGGAACGTGAAGACACGCGCTCCTGCTGCGGCGGCGGGGGTTAAGGGTAGGCCCAAGACAAAGGCGGCGGCAGCGGCGAAGAAGCCGGTGATCGTTACATCGGAAGCGAAGGCGAAAGAGGTTAAAGAAAAGGTTTTCGGCGTGATGGGTGATGATAGTGGTGGCTTGAGCGCCAACAAGGGTGCTGCACCCGAAGATAACACTCCCCCTTTTCCTGAGAGGGTTCAAGTTGGAGGATCACCTATGTACAAGGTTGACAGGAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGTCGTGAGCGTGCAACAGGCCCTGGAGCTGCCGAGGTGGCTCTGAAATTCGAACATAGGAACAGTAAAGGCTGTAACTATGGCCCTCCATATGAGTGGCAAGTTTACAACATCCTTGGTGGTAGTCATGGAATACCTAGGGTACACTACAAAGGAAGACAAGGAGAATATTACATAATGGTTATGGACATGCTTGGTCCGAGTTTGTGGGATGTCTGGAATTCCTCAAGCCAGACGATGTCTGCTGAAATGGTTTCATGCATAGCTGTTGAATCCTTATCAATACTCGAGAAGATGCACTCGAAGGGCTATGTGCATGGAGATGTAAAACCAGAGAACTTCTTACTAGGTCAGCCATCTACAGCACAAGAGAAGAAACTGTTTCTGGTAGACCTTGGATTAGCAACAAAGTGGCGAGACACCTCAAGTGGGATGCATGTTGATTATGATCAGCGTCCTGACATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCAAGTAGAAGGGATGATCTTGAATCTCTTGCATACACACTCATCTTCCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGTGATACCAAGTCCTTCCTCGTTTGCAAAAAGAAGATGGGGACATCGCCTGAGATGCTTTGCTGCTTTTGCCCTGCTCCATTTAGGCACTTTCTTGAGGTTGTAGTGAACATGAAATTTGATGAAGAACCCAACTATTCCAAGTTAATATCACTGTTTAATGGAATACTTGACCCGAATCCAGCATTGCGGCCACTTAATACTGACGGTGCTCAGAAGGTTGGACAAAAGCGGGGTAGACTGAATATGGAGGAAGAGGATGATTCACAGCCAAAGAAGAAGGTTCGATTAGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCCATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGACTAGCACAGCATGTTGAGAGAGGAATTGCAGATGGCCTTCTTATTAGTTGTGTATCATCGTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGATTTACAAATCAAGTCTATAAGTTGTCACCCTTTTTCTTGCACAAGGAATGGATCATGGAGCAGTGGGATAAGAATTATTACATCACTTCTATTGCAGGGGGAAATAATGGAACCTCTCTTGTGGTGATGTCAAAAGGTACACAGTATACTCAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACATCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGCAATGCTGGATTCAGTGATCAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGTATCCATCGACGTTGGGACGGTGGTTATAGAATTACCGCAACTGCTGCTACATTGGACCAATCTGCTCTAATATTAAGTATTCCGAGGCGCAAGCCAGGAGATGAAACTCAGGAAACTCTACGGACATCTCAATTTCCCAGCACACATGTTAAGGAGAAATGGTCAAAGAATCTTTATCTTGCTTGTTTGTGCTATGGGCGTACTGTATGCTGA 2004 0.4621 MPELRSGVRRGRAAVGQKGSEPPAPARRNVKTRAPAAAAGVKGRPKTKAAAAAKKPVIVTSEAKAKEVKEKVFGVMGDDSGGLSANKGAAPEDNTPPFPERVQVGGSPMYKVDRKLGKGGFGQVFVGRRERATGPGAAEVALKFEHRNSKGCNYGPPYEWQVYNILGGSHGIPRVHYKGRQGEYYIMVMDMLGPSLWDVWNSSSQTMSAEMVSCIAVESLSILEKMHSKGYVHGDVKPENFLLGQPSTAQEKKLFLVDLGLATKWRDTSSGMHVDYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDTKSFLVCKKKMGTSPEMLCCFCPAPFRHFLEVVVNMKFDEEPNYSKLISLFNGILDPNPALRPLNTDGAQKVGQKRGRLNMEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVSSCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWDKNYYITSIAGGNNGTSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGYRITATAATLDQSALILSIPRRKPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03379 667 MobiDBLite consensus disorder prediction 78 105 - -
Aip09g03379 667 PANTHER CASEIN KINASE-RELATED 68 640 - -
Aip09g03379 667 MobiDBLite consensus disorder prediction 1 48 - -
Aip09g03379 667 CDD STKc_CK1 109 380 - -
Aip09g03379 667 SUPERFAMILY Protein kinase-like (PK-like) 110 392 IPR011009 -
Aip09g03379 667 ProSitePatterns Protein kinases ATP-binding region signature. 116 143 IPR017441 GO:0005524
Aip09g03379 667 MobiDBLite consensus disorder prediction 405 420 - -
Aip09g03379 667 Pfam Protein kinase domain 110 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03379 667 MobiDBLite consensus disorder prediction 394 420 - -
Aip09g03379 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Aip09g03379 667 Gene3D Transferase(Phosphotransferase) domain 1 89 427 - -
Aip09g03379 667 SMART serkin_6 110 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03379 667 ProSiteProfiles Protein kinase domain profile. 110 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03379 667 PANTHER CASEIN KINASE I-LIKE PROTEIN 68 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03379 Aip-Chr9 140415543 140420297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03379 98 263 EF-hand Containing Proteins AT4G21940 27.273 7.78e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Aip09g03379 Pkinase 1.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03379 - - gmx:100819969 1184.09