Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03378 ATGGATGACTATACTCGCGAAATGATGGACCTGAAGACACTCGTTACGCGCACCCTCGAGAAGAAAGGCGTCCTCGCCAGGATCCGCGCTGAACTCAGAGCAAGCGTTTTTGAGGCTATCGAAGAGGAGGATCGGGTAATCGAGAAGGAACCTGCGTTGCCTCCTGCATTGCTTGGTAGCTGCAACGATCGAGCCAAACAGCTTCACGCTTCTCCCTCAGGTAGACTCCTTACTGCGCTTATTTGTGAATACCTAGACTGGGCGCAACTCAATCACACGTTGAAGGTTTACCTTCCAGAATGTAATTTGGAAAAGGATTTTTGGAAGGCTGAGCTGAAAGAATTTAGTAGCAAAAATGGATACGACCTCAACAGAAATGGAGATAGCCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAGATTTGAGAATCTATCCCAGGCACGGGCTTTGCCAAACTCAGACTCCCGAAACATGCGAAGGCCTTCTTCATCATCTGTTGCCGGTGGCTTGCCACCGCTGGGAAGGTGCATAATTGACCATGTTTCTATACGAGTTGATAGAAGAGGAGGATCCTCGACGTCTGCATATAGGATGGATGAGTACAATTGGCGATATGACAGTGATGAACTTCCTGAGGGTGTAATTCAAGCCTCAAGTGCACTGGAAAATCTTCATTTGGACAGGAAGGCTCGGAATCTAACATCTTCTTGGAGGCATGCTGGTGATGGGATCGGAGTTGGCAAAGTACTAAATTTTCTGTCTAAGGTTTTGGACATTGGAAATAACGTCCTTGATAGTTTCCACTTTAATGTATCATGGTGTCAGTGTTCATTCATTAGTAGGCATTTGATTTCTGGAGCTTGGATGGTTGTATCAGCTACGTTTAGGCGAATTGTCGCTCCTTGTTGGAGGCCATCTGATGTTCAGAATGGGAATGGGGATGCAAATGGTGAATATGATGGTTTGCTTTGGTACAAAGATTCAGGAAGACATGCTAATGGGGAATTCTCCATGGCAGTTATTCAGGCAAACAATTTGTTGGAGGATCAAAGCCAACTTGAATCAGGCCCCATAAGCTCGCTCACAACGAATCCTCATGGAACTTTTGTTGGTATCTATGATGGCCATGGAGGTCCAGAAGCTGCCCAGTTCGTGAACGAACGTCTGTTTAAAAATGTTAAGAAATTTACCTCAGAAAATCATGGAATGTCGGCTGACGTTATCAATAAAGCATTCTTGGCAACAGAAGAGGAATTTCTGTCTGTTGTAAGGAAGCAGTGGCAAATCAAGCCGCAGCTAGCCTCTGTTGGATCCTGTTGTTTGATTGGCATAATATGTAGCGGGGTGCTCTATGTTGCAAATGCAGGAGACTCTAGAGCAGTGTTAGCTAGGGTGGATGAGGCTACGAAAGATATTAAAGCTATTCAGTTATCCTCTGAGCACAATGCTAGCTGCGAATCTGTCAGAGACGAGTTGCGCTCGTTGCATCCTGATGATCCACAGATTGTAGTTATGAAGCACCAGGTCTGGCGTGTGAAGGGTCTGATTCAGATTTCAAGATCCATTGGCGACGCCTATCTAAAAAAGGCAGAGTTTAACAAACCACCATTGTTGCCAAAATTTAGGCTTGCTCAACCCTTTGAGGAGCCAATCCTTAAAGCCGAACCAGCAGTAACAGTGCAAAAACTCGAACCGGGAGATCAGTTTCTTATATTTGCTTCAGACGGATTATGGGAGCATATGAGCAATCAAGAAGCAGTTAACATTGTCCAGAGCTGTCCGCGCAATGGAGTAGCAAGGAGACTCATCAAAACAGCACTTTGTGAAGCTGCAAAGAAGAGAGAAATGAGATACTCAGACTTGCAGAAGATTGAGAGAGGGGTGAGGAGACATTTCCACGACGACATCACAGTCATAGTTTTGTTCCTTGATTCCCATTTAATAAGCCGTGATAATTGGAGCAGCCCTATGGTTTCAGTCAGAGGTGGTGGTTATAGTGGTAGTGGTCTTATTGGTCTTGGTCTTGTAGATGGCTAG 2040 0.4525 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKEPALPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNLEKDFWKAELKEFSSKNGYDLNRNGDSPLLLDVLEGFLRFENLSQARALPNSDSRNMRRPSSSSVAGGLPPLGRCIIDHVSIRVDRRGGSSTSAYRMDEYNWRYDSDELPEGVIQASSALENLHLDRKARNLTSSWRHAGDGIGVGKVLNFLSKVLDIGNNVLDSFHFNVSWCQCSFISRHLISGAWMVVSATFRRIVAPCWRPSDVQNGNGDANGEYDGLLWYKDSGRHANGEFSMAVIQANNLLEDQSQLESGPISSLTTNPHGTFVGIYDGHGGPEAAQFVNERLFKNVKKFTSENHGMSADVINKAFLATEEEFLSVVRKQWQIKPQLASVGSCCLIGIICSGVLYVANAGDSRAVLARVDEATKDIKAIQLSSEHNASCESVRDELRSLHPDDPQIVVMKHQVWRVKGLIQISRSIGDAYLKKAEFNKPPLLPKFRLAQPFEEPILKAEPAVTVQKLEPGDQFLIFASDGLWEHMSNQEAVNIVQSCPRNGVARRLIKTALCEAAKKREMRYSDLQKIERGVRRHFHDDITVIVLFLDSHLISRDNWSSPMVSVRGGGYSGSGLIGLGLVDG 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03378 679 PANTHER ALPHABET, ISOFORM E-RELATED 298 666 - -
Aip09g03378 679 Pfam Protein phosphatase 2C 360 614 IPR001932 -
Aip09g03378 679 Gene3D - 326 653 IPR036457 -
Aip09g03378 679 SMART PP2C_4 328 642 IPR001932 -
Aip09g03378 679 Pfam LisH 77 103 IPR006594 GO:0005515
Aip09g03378 679 SUPERFAMILY PP2C-like 362 645 IPR036457 -
Aip09g03378 679 CDD PP2Cc 337 644 IPR001932 -
Aip09g03378 679 Gene3D - 59 138 - -
Aip09g03378 679 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Aip09g03378 679 ProSitePatterns PPM-type phosphatase domain signature. 370 378 IPR000222 GO:0043169
Aip09g03378 679 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 298 666 - -
Aip09g03378 679 ProSiteProfiles PPM-type phosphatase domain profile. 344 644 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03378 Aip-Chr9 140395312 140402132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03378 290 665 PP2C-type Phosphatase Gene Family AT3G12620 74.074 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03378 K01102 - tcc:18586300 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03378 09 140395312 140402132 Aip09g03378 09 140395312 140402132 ECH