Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03344 ATGATCATAATTCATCAAGAACAACATAGAATGATGATGCCAAATAATAACTCTGAAACGTGTTCATCACCTTCTAATAATAATAAAGAAATAATGGGGAAACGTTTGAGGTACGAAGAGAACGCAGGGTTTCAGAAGTTCAAAGGCGTTGTTCCTCAGCAAAACGGGCATTGGGGAGCACAAATATACGCAAACCACCAGAGAATATGGCTGGGAACATTCAAGACGGAAAGAGAAGCCGCCATGGCTTACGACAGCGCCACCATCAAGCTAAGAAGCGGCGAAAGCCACAGAAACTTCCCGTGGAACGATCAAACCGTTCAGGAGCCTTATTTCCAGAGCTATTACAGCACGGAAACTGTTCTTACCATGATCAGAGACGGTACATATCCCTCCAAATTTACATCATTTCTTCAAAATCAAACCCATAAAGAAGAAGCCACAGGAACAATTTATTCCCATAATACGCGCATCAAGATTCGAGGAGGAGAACAGTTTTCTTGCACGCAACTGTTTCAGAAAGAATTAACGCCCAGCGACGTTGGGAAACTGAACAGGCTTGTTATTCCAAAGAAACATGCAGTTACGTATTTGCCCTTTGTTGATGGAAATAACAATAATAATAATAATGCAATGGAAGCAGGGGAATTCGGCGGCGGCGGCGGCAGCGGCGTTGATGTGGAGGTTATGTTTTACGATAAGTTGATGAGATCGTGGAAATTCAGGTACTGCTATTGGAAGAGTAGCCAGAGTTATGTGTTCACGAGAGGGTGGAACCGTTTCGTGAAGGACAAGAAACTCAAGGCTAAAGACGTCATTGCATTTTACATGTGCGAGCCTGTGAATAATGAAGTTCATCAGCACCGTCTGTTTGGGTTGATCGATGTGATTTATAATAATACGGAAAATGTTGAGACCACAAAACGAGAGGTAATTGGGAAGAGTACTACTAGGTTAGCTTGCAGTGAAGTAGTTGTAGAAGATATGGAAGAAGAAGATGAAGACAGAGAAGAAGAAGAAGAACATAAAGTAGTAGGGAGCAATAATAATAATAATAATGTTGATGGAATGGAGTTGAATCCACCACACAAAGGTGTGAAGCTATTTGGCGTATCTATCAACTGA 1125 0.4169 MIIIHQEQHRMMMPNNNSETCSSPSNNNKEIMGKRLRYEENAGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKTEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPYFQSYYSTETVLTMIRDGTYPSKFTSFLQNQTHKEEATGTIYSHNTRIKIRGGEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYLPFVDGNNNNNNNAMEAGEFGGGGGSGVDVEVMFYDKLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFYMCEPVNNEVHQHRLFGLIDVIYNNTENVETTKREVIGKSTTRLACSEVVVEDMEEEDEDREEEEEHKVVGSNNNNNNVDGMELNPPHKGVKLFGVSIN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03344 374 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700|GO:0006355
Aip09g03344 374 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
Aip09g03344 374 Gene3D - 167 299 IPR015300 -
Aip09g03344 374 SMART B3_2 172 297 IPR003340 GO:0003677
Aip09g03344 374 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Aip09g03344 374 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Aip09g03344 374 SUPERFAMILY DNA-binding pseudobarrel domain 170 289 IPR015300 -
Aip09g03344 374 CDD B3_DNA 171 277 IPR003340 GO:0003677
Aip09g03344 374 MobiDBLite consensus disorder prediction 329 361 - -
Aip09g03344 374 Pfam B3 DNA binding domain 172 279 IPR003340 GO:0003677
Aip09g03344 374 ProSiteProfiles B3 DNA-binding domain profile. 172 291 IPR003340 GO:0003677
Aip09g03344 374 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
Aip09g03344 374 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 374 IPR044800 GO:0003700
Aip09g03344 374 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 15 374 - -
Aip09g03344 374 Pfam AP2 domain 46 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03344 Aip-Chr9 139934879 139936003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03344 42 339 RAV Transcription Factor Family AT1G50680 54.221 1.01e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Aip09g03344 B3 3.6e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03344 K09287 - gmx:102660503 353.599