Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03342 ATGATGAATGCTGGTAGCAACCCTGCTCTTCCTCAAGTTAGTAGAACACCACCTGTTCCTCCATCTTTCCCGGATGGGTCTTCTCCTCCAATGGTTAAAACCAGATTGTGCAACAAGTATAATTCAAGCGAAGGTTGTAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGATTGGCAAGCCTACAATGCCTTCATATGAAGACAGACAAAGGATTGGTGGGCGAGTTGAGACTCCAGCTCATGGAGCTGCTGCTGGCTTTGGCGCCTCAGCTACCGCGAAGATTAGCATCAATGCTTCCCTTGCTGGGGCTGTTATTGGGAAAAATGGTATCAACTCGAAGCAAATCTGTCGTGTAACAGGAGCAAAACTTTCTATCAGGGAACATGATTCTGATCCTAACCTTAAAAACATTGAGCTTGAAGGAAGTTTTGATCAGATCAAACAAGCAAGTTCCATGGTCCACGAACTTATTCTGAATGTTAGTTCGGCTGCTGGACCTGCAAAGAAGAATGTCACTTCATATGGTCCTGGTTCAAACAACTTCAAAACCAAGATATGTGAAAAATTTTCAAAAGGCTCCTGCACTTTCGGGGAGAAGTGCCACTTTGCCCATGGAATAGAAGAATTACGCAAGAGTGGAATGTGA 657 0.4429 MMNAGSNPALPQVSRTPPVPPSFPDGSSPPMVKTRLCNKYNSSEGCKFGDKCHFAHGEWEIGKPTMPSYEDRQRIGGRVETPAHGAAAGFGASATAKISINASLAGAVIGKNGINSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQIKQASSMVHELILNVSSAAGPAKKNVTSYGPGSNNFKTKICEKFSKGSCTFGEKCHFAHGIEELRKSGM 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03342 218 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Aip09g03342 218 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 20 217 - -
Aip09g03342 218 MobiDBLite consensus disorder prediction 1 30 - -
Aip09g03342 218 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 86 164 IPR036612 GO:0003723
Aip09g03342 218 MobiDBLite consensus disorder prediction 13 27 - -
Aip09g03342 218 Pfam KH domain 96 158 IPR004088 GO:0003723
Aip09g03342 218 ProSiteProfiles Zinc finger C3H1-type profile. 31 59 IPR000571 GO:0046872
Aip09g03342 218 CDD KH-I 97 158 - -
Aip09g03342 218 SUPERFAMILY CCCH zinc finger 184 214 IPR036855 GO:0046872
Aip09g03342 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Aip09g03342 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 209 IPR000571 GO:0046872
Aip09g03342 218 Gene3D - 26 63 - -
Aip09g03342 218 Gene3D - 185 216 - -
Aip09g03342 218 SUPERFAMILY CCCH zinc finger 29 61 IPR036855 GO:0046872
Aip09g03342 218 SMART kh_6 92 162 IPR004087 GO:0003676
Aip09g03342 218 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Aip09g03342 218 SMART c3hfinal6 184 210 IPR000571 GO:0046872
Aip09g03342 218 Gene3D K Homology domain, type 1 87 184 IPR036612 GO:0003723
Aip09g03342 218 ProSiteProfiles Type-1 KH domain profile. 93 157 - -
Aip09g03342 218 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 20 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03342 Aip-Chr9 139884599 139888213 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip09g03342 KH_1 6e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03342 - - gmx:100792652 348.591