Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03277 ATGCAGCTAGGAGACCCTACTGTGTTGGAAACCTCCACCGGGGCGGCGGCGGAGGGCGGCGCCGAGGCCATTGGGTCGGAAATTAGCATAAAGGAGGGTGGTGGCGATGAGGGTGAGAAGATGAACTTTGGTGGTGGAAATCGGTGGCCCCGGCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATTCTGTGTTTCGAGATTCAAGTCTCAAGGGTCCACTCTGGGAAGAAGTTTCAAGGAAACTAGGAGAACTTGGATATCATCGAAGCGCAAAGAAGTGTAAAGAGAAATTTGAGAACGTTTACAAGTACCACAAGAGAACGAAAGAGAATCGAAGTGGAAAATCCGAAGGCAAAATCAAAACCTACAAATTCTTTGACCAATTGCAAGCTCTTGAGAATCATCAATTCACTCTTTCATACAACCCTACACCAAAGCCACAACCACCACCCACTTTGCCAACAAACACACTGCCATTATTACCAACAAGGCCTAGTGACGCCACCACCACCACCACCACTGTTCCATCCACAAACCCTACACCACCACCAACCACCACCACAACTGTCGTTACCAACCCTAATCCATCGTCACAAGAAAATAATAATAATATCAATAATACTGATAGTCGTGTGCAACATTCTTTGCCCATAATGAACAACCTTTTCTCTTCTACCTCGACTTCTTCCTCCACGGCCTCTGACGAGGACCTGGAGGAGAAGTACAGGAATAAGAGGAAATGGAAGGAGTACTTCAGGAGGCTGACTAGGCAGGTGTTGGCGAAGCAGGAGGAGATGCAGAAGAGATTCTTGGAAGCCATTGACAAGAGGGAGAGGGAGCAAGTTGCTCAGCAAGATGCATGGAGGATGCAAGAGATGACCAGGATCAATAGAGAGCACGACATTCTCGTTCAAGAACGATCAACCGCCGCCGCAAAAGACGCCGCCGTTATCGCATTCTTGCAAAAGTTATCCGGCCAACAACAAACTCCACCACCACCGCCACCACCACAACCTCCAATCACAGTTTCCTTTGGTGCCAATTTCTTCCAACAACCAACACCGACACCGACACCAACACCAACACCGGTACAAGTACAACCACCACCACATCCACATCCACAACCACAGCCGCAACCGCAACCGCAACCGCAAAAACAATTACAACCTGCAGCATTGACTAACGGTGACAGTCCGGGTCCATTGTCGAGTCCTTCATCATCAAGGTGGCCAAAAGCTGAAGTACATGCTTTGATAAGGCTTCGAACGAGCATGGAACCCAAGTATCAGGAGAATGGACCAAAAGCTCCGTTATGGGAGGACATATCAGCGGGGATGCAGAGGCTAGGGTACAACAGAAGCGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAAGAGAGCAAGAAGCAAAGGCGAGAAGATAGCAAGACTTGTCCCTATTTTCATGAACTCGATGCTCTATACAGAGAGAAAAGCAAAGGCCAGAACACCAACACTTTCTCCTTTCACATCACGAATAAGACCAATGAGATGATGATGGAGCCGTTGATGGTGCAACCCGAGCAGCAATGGAGGCCTCCCCCTCAGTACCAACAACAACAACAGCAGCAGGATAAGGATGTGGATAAGAGTAATAACAACAATAATGCATGCCATGAAGATGATGAATCTAGAAAGAGAGAGAGAGAATATGATCATGAAGAAGAAGAGGAGGATGATGATGATGATGAAGTAGTAGATGACGATGATGATGGTGATGGAGATAGTGTGGAAGATGAAGGAGGTAACCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACGCGGTTGAATGA 1872 0.4733 MQLGDPTVLETSTGAAAEGGAEAIGSEISIKEGGGDEGEKMNFGGGNRWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKENRSGKSEGKIKTYKFFDQLQALENHQFTLSYNPTPKPQPPPTLPTNTLPLLPTRPSDATTTTTTVPSTNPTPPPTTTTTVVTNPNPSSQENNNNINNTDSRVQHSLPIMNNLFSSTSTSSSTASDEDLEEKYRNKRKWKEYFRRLTRQVLAKQEEMQKRFLEAIDKREREQVAQQDAWRMQEMTRINREHDILVQERSTAAAKDAAVIAFLQKLSGQQQTPPPPPPPQPPITVSFGANFFQQPTPTPTPTPTPVQVQPPPHPHPQPQPQPQPQPQKQLQPAALTNGDSPGPLSSPSSSRWPKAEVHALIRLRTSMEPKYQENGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESKKQRREDSKTCPYFHELDALYREKSKGQNTNTFSFHITNKTNEMMMEPLMVQPEQQWRPPPQYQQQQQQQDKDVDKSNNNNNACHEDDESRKREREYDHEEEEEDDDDDEVVDDDDDGDGDSVEDEGGNRYEIATNKLSSVDAVE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03277 623 MobiDBLite consensus disorder prediction 162 179 - -
Aip09g03277 623 CDD GT1 412 476 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 532 623 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 1 47 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 146 161 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 328 415 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 357 388 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 577 601 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 331 345 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 193 213 - -
Aip09g03277 623 Pfam Myb/SANT-like DNA-binding domain 47 135 IPR044822 -
Aip09g03277 623 Pfam Myb/SANT-like DNA-binding domain 411 498 IPR044822 -
Aip09g03277 623 MobiDBLite consensus disorder prediction 535 555 - -
Aip09g03277 623 SMART sant 45 107 IPR001005 -
Aip09g03277 623 SMART sant 409 471 IPR001005 -
Aip09g03277 623 ProSiteProfiles Myb-like domain profile. 411 469 IPR001005 -
Aip09g03277 623 MobiDBLite consensus disorder prediction 389 413 - -
Aip09g03277 623 PANTHER - 19 611 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 556 576 - -
Aip09g03277 623 CDD GT1 47 112 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 225 244 - -
Aip09g03277 623 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 19 611 - -
Aip09g03277 623 MobiDBLite consensus disorder prediction 142 213 - -
Aip09g03277 623 Gene3D - 49 110 - -
Aip09g03277 623 Gene3D - 413 474 - -
Aip09g03277 623 ProSiteProfiles Myb-like domain profile. 47 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03277 Aip-Chr9 138862116 138865466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03277 32 534 Trihelix Transcription Factor Family AT1G76890 47.280 1.95e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip09g03277 Myb_DNA-bind_4 4.4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03277 - - gsj:114370603 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03977 05 148036959 148039175 Aip09g03277 09 138862116 138865466 PCT