Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03275 ATGTCCTTCCGTAGTATAGTTCGCGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGACTTGAGGCTTTCTGGCCATCACAGGGGCAAGTCTCGTAGCTCTGTCCACGAGTTGCATGATCAGCCTCCGGTTATACAGAACAGCCGGTGGGCTAGTCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGGTTGGAAGCTAGTGAGAGTACCTGGCCTGGTCGTAAGCATGTGGTTGCGTGCGCAGCTGTGTGCAAAACCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAATACTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAACAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAGTCTAAGCTGACATACCATCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAACGAACCAGAAGGACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACGTATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTATAACAACGCACAGCTGTCTCCACCGGGCCGGAGCCGCAGGTTTTATTCGAAAAAGGTCTCTCCGAAGCTCCCTAATGGCAGCTACAACATCGCCCAGGTCAACTACGAGTTGAATGTCCTTGGTACTAGGGGCCCAAGAAGGATGCATTGCACCATGTATTCAATCCCCGCATCATGCCTTGAGCCCGGCGGCTCGGTTCCAGGTCAGCCAGAGCTCCTTCCCCCCTCCCTTGAGGATTCTTTCCGGAGTATCTCCTTCTCAAAGTCGATAGGCCATTCAACTGAATTTAGCAGCTCCAGGTTCTCTGACATAATGGGCGCGGGCAATGAGGACGTGGAGGGAAAGGAGAGACCACTAGTCCTTAAGAACAAGCCTCCACGGTGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACCGTCGCCTCGGTCAAGAATTTCCAGCTGATTGCTGCAAATTCACAACCTGCTGCTCCTCCTCCTCCTGCAGGAACAGGACCACCAACATCTCAGCCGTCGCAGTCTGACCCTGACAAGATCATTCTTCAGTTTGGCAAGGTCGGCAAGGATATGTTCACAATGGACTACCGGTACCCTCTATCAGCATTTCAGGCATTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 1296 0.4915 MSFRSIVRDVRDGFGSLSRRSFDLRLSGHHRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKTWREMCKEIVSSPEYCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLAAKRTRRTTCTEYIISMDADNVSRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKLPNGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPASCLEPGGSVPGQPELLPPSLEDSFRSISFSKSIGHSTEFSSSRFSDIMGAGNEDVEGKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANSQPAAPPPPAGTGPPTSQPSQSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03275 431 MobiDBLite consensus disorder prediction 365 388 - -
Aip09g03275 431 Gene3D Tubby Protein; Chain A 110 431 IPR025659 -
Aip09g03275 431 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 431 - -
Aip09g03275 431 PANTHER TUBBY-RELATED 1 431 - -
Aip09g03275 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Aip09g03275 431 Pfam Tub family 114 426 IPR000007 -
Aip09g03275 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Aip09g03275 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Aip09g03275 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Aip09g03275 431 Gene3D - 48 101 - -
Aip09g03275 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Aip09g03275 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Aip09g03275 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Aip09g03275 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Aip09g03275 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Aip09g03275 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Aip09g03275 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Aip09g03275 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03275 Aip-Chr9 138775798 138778695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03275 1 431 TUB Transcription Factor Family AT1G76900 69.717 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aip09g03275 Tub 9.2e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03275 K19600 - qsu:111992792 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03275 09 138775798 138778695 Aip09g03275 09 138775798 138778695 ECH
Aip05g03979 05 148080501 148084890 Aip09g03275 09 138775798 138778695 PCT