Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03259 ATGTCTCACAGGAAGTTCGAGCACCCAAGACACGGTTCTCTGGGATTTCTCCCGAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCATTCCCCAAGGATGACCCGTCAAAGTCCCCCAAGCTTACTGCTTTCTTGGGTTACAAGGCTGGTATGACCCACATTGTTCGAGAGGTCGAGAAACCAGGATCCAAGCTTCACAAGAAGGAGACTTGTGAGCCAGTTACAATTATCGAGACCCCTCCAATGGTTATCGTTGGAGTTGTGGGTTATGTGAAAACTCCAAGGGGTCTGAGGACCTTGAACACTGTATGGGCTCAGCATTTGAGTGAGGAGATCAAGCGTAGGTTTTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCATTCACCAAGTACTCAAAGCAGTATGAATCTGAAGATGGAAAGAAGAGCATTGAATCACAGCTTGAGAAGATCAAGAAGTATGCAACTGTTGTCCGTGTTTTGGCTCACACTCAGATCAGAAAAATGAAGGGTTTGAAGCAGAAGAAGGCCCATATCATGGAGATCCAAGTCAACGGTGGCACTATTGCCCAGAAGGTGGACTTTGCCTATGGTTTCTTTGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACATCATTGGTGTCACAAAAGGTAAGGGTTATGAAGGTGTTGTGACCCGTTGGGGTGTGACTCGTCTTCCCCGCAAGACTCACAGGGGTTTGAGGAAGGTGGCTTGTATTGGTGCTTGGCATCCTGCTAGGGTATCCTTCACTGTTGCCAGGGCTGGTCAGAACGGATACCACCACAGAACTGAGTTGAACAAGAAGATTTACAAGCTTGGCAAAGCTGGAACTGAGTCTCACACTGGTGATACCGAGTTTGACAGAACTGATAAGGACATTACTCCCATGGGTGGCTTCCCGCACTACGGTGTTGTTAAGGATGATTATCTCATGGTCAAGGGTTGCACAGTTGGTCCAAAGAAAAGGGTTATTACATTGCGCCAATCCCTCCTCAAGCAGACTTCCCGTGTTGCCCTGGAGGAGATCAAGCTCAAGTTCATCGACACCTCCTCAAAGTTTGGACATGGTCGCTTCCAGACAACACAAGAGAAGCAAAAGTTCTTTGGACGCCTCAAGGCATAA 1170 0.4778 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEIKRRFYKNWCKSKKKAFTKYSKQYESEDGKKSIESQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKAGTESHTGDTEFDRTDKDITPMGGFPHYGVVKDDYLMVKGCTVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03259 389 Gene3D Translation factors 44 385 - -
Aip09g03259 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Aip09g03259 389 MobiDBLite consensus disorder prediction 1 37 - -
Aip09g03259 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Aip09g03259 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Aip09g03259 389 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 389 - -
Aip09g03259 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Aip09g03259 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Aip09g03259 389 Gene3D - 83 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03259 Aip-Chr9 138559757 138562975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03259 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.563 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03259 K02925 - gmx:100819132 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03259 09 138559757 138562975 Aip09g03259 09 138559757 138562975 ECH