Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03254 ATGCAACAAGAGGGAATCATTATCATCAACGAAAGGGAGATTTTGGTTACACTGGCAAAGGTGGCGGGTTCGGACGAGTTTAGAAAGTTGAAGGCGGTGGAGGATGAAGAGGGTGGAGGCTCATCATCATCACAAGGTTGTTCATCAATAGTATCAGAGCTGGAACAACTAGTATCAGGAACGCACGCCAACCCACAAGAACAGTGGTGGGGCCATGAACAACAACAATCTTCTATGATGCATCAACAGCATCATCACGATGATGATGTTTCTGCCTCTGTTCTTTGGGGTGGCCATAAAAGAGGGCGTCAGGAAGAAACTAATATTCAGACTGCTGGTACATCTTCTCATAATCAATTGTTACAACATGTCACTACTCTTCATGCATCACAACCAAGTGCAGGAACAACTTCAAGCGAAAGTGGTACATCCTACGAAGAGACAGGAGAGAGAAAGAGGAAATACAGAGGAGTGAGGCAGAGACCATGGGGAAAATGGGCCGCAGAGATTCGAGACCCTCACAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACTGCGGAAGCTGCCGCAAGAGCTTATGATGAAGCCGCATTGAGGTTTAGAGGAAACAGAGCCAAACTCAACTTCCCTGAAAATGTCAAAGCAGTCCCAGTACCACCACAACAAACAACTGTCCTTCAGGCATCTCCCGTACCAGTTTTTCGGCCGGTGATGCAGGGGCCACGGCCTCCTCTTCAGGTCTCTCCTGAGCAGATGATGAATGACTACTTGCAATATTCTGAGTTATTGAAGAGCTCTGGTGACCACTTTCATGGACAGTGGCTTTACCGTTCACAAATGAATTTGGCAGATCAAACTTCGTTATTATTATCAACGTCTTCGGGTTCGTCTTCGCTTTCATTTTCGTCTTCATTGCCGGCTGAGTTTTCACCGTCTACGAGTCAATCCTCCTCTGCTTCATTTCCTCTGCTGTTTTCTTCAGTTCAACAGCAACCAGGACATCAACCAGGATTTTTCCGTCCACCGAGATATTATTCTGACAATATCAGAGGAGCAAGCGGCGGATTGAGTTTTCCACCACCTTCAACGTGGTCAGATACCCATGGCTATCCTCCTCCGAATTGA 1128 0.4672 MQQEGIIIINEREILVTLAKVAGSDEFRKLKAVEDEEGGGSSSSQGCSSIVSELEQLVSGTHANPQEQWWGHEQQQSSMMHQQHHHDDDVSASVLWGGHKRGRQEETNIQTAGTSSHNQLLQHVTTLHASQPSAGTTSSESGTSYEETGERKRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVKAVPVPPQQTTVLQASPVPVFRPVMQGPRPPLQVSPEQMMNDYLQYSELLKSSGDHFHGQWLYRSQMNLADQTSLLLSTSSGSSSLSFSSSLPAEFSPSTSQSSSASFPLLFSSVQQQPGHQPGFFRPPRYYSDNIRGASGGLSFPPPSTWSDTHGYPPPN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03254 375 CDD AP2 154 213 IPR001471 GO:0003700|GO:0006355
Aip09g03254 375 MobiDBLite consensus disorder prediction 330 375 - -
Aip09g03254 375 MobiDBLite consensus disorder prediction 128 159 - -
Aip09g03254 375 SMART rav1_2 154 217 IPR001471 GO:0003700|GO:0006355
Aip09g03254 375 MobiDBLite consensus disorder prediction 128 144 - -
Aip09g03254 375 Gene3D AP2/ERF domain 153 213 IPR036955 GO:0003700|GO:0006355
Aip09g03254 375 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Aip09g03254 375 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Aip09g03254 375 PANTHER DNA-BINDING DOMAIN 45 335 IPR044808 GO:0003700|GO:0009873
Aip09g03254 375 ProSiteProfiles AP2/ERF domain profile. 154 211 IPR001471 GO:0003700|GO:0006355
Aip09g03254 375 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 45 335 - -
Aip09g03254 375 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Aip09g03254 375 Pfam AP2 domain 154 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03254 Aip-Chr9 138478117 138480252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03254 102 219 AP2-EREBP Transcription Factor Family AT2G33710 54.622 2.02e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip09g03254 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03254 - - adu:107467893 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03254 09 138478117 138480252 Aip09g03254 09 138478117 138480252 ECH