Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03252 atgccaccttcgtcgccgctgctgacagaagagagaggagatctgagagagaaggagagtaccgcgaggaagccgccgcgcagctcaggaccgccgtcgcgtcgcgtcgcgtcgcgtcgccgttggcgccagcgccgAGGAGACCACGCGGGGAGGAGAGACGCGCGAGGGAGAGAGAGCGGGATCTCAAGCCGAGCTGAGGTCCAACCACCGTGTCAGAACCCTTTTCGCGTCGCCAGCGTTGCCCACACCGTGAAGCCGTCGCCGCCGCTACTGTACCCGCGTCGTCGTCGTTCTCGTCCCGGAGTCGGTTGCCGCCACTTATGGAGGATCCAGAGAGAGCGAGAGAGAGCGAGCTCGGGAGCAGAGGAGAGAAAAGAGAGACCCGCGCCAGCCAccgccgcttctgccgctcgaaatcctgctgctgccggcggagaatgcactgtcgTTGTGGTTGTGGTGGTGGTGGTGGTGGTGGTGGTGATAGCGGCAGAAGGGGTAGGATCTACTGTAGAGGCATCGCATGGAAGACCCTGTGTTCTTGAAATAATGGTTCAGTTTGTGATTGGAAAGGCGTGTGAAGAGGAAAAATGGGTGGCAGAGATTCGCGATCCAAGGAAAGTTGTTCGTGTTTGTCTTGGAACCTTCAACACCACCAAAGAAGCCGCCTGGGCCTATGACAAAGAAGCTCGTAAGATTCATGGAAAGAAAGCTAAAGCAAGGACTCTGAACCTCAACTTAGAGTTTGTTTACGATCTGAATCATGGAGGAGCTATTGGTGTTGGTGGTGCCATCAACGCAGATCCATTTGTGAGTTGTGTTGATGATTATTCTGAGTATGAGTCTGGTTCTGGTTTGGCATCGGAGAAGAAGGGGTTGAGTCTTGAGAAGAAGGGATTGAGTATTAGAGAAGCATCTTTGGTTAGAAGAGTAAGAAGAAGGAAGAAGGTAGAGGCAATATCGGATGAAGAGGATTTAATTGAGAAAGAAATTTGGCGGATGATGATGAGGAAGGGGAAGAGATGA 1029 0.4159 MPPSSPLLTEERGDLREKESTARKPPRSSGPPSRRVASRRRWRQRRGDHAGRRDARGRESGISSRAEVQPPCQNPFRVASVAHTVKPSPPLLYPRRRRSRPGVGCRHLWRIQRERERASSGAEERKERPAPATAASAARNPAAAGGECTVVVVVVVVVVVVVIAAEGVGSTVEASHGRPCVLEIMVQFVIGKACEEEKWVAEIRDPRKVVRVCLGTFNTTKEAAWAYDKEARKIHGKKAKARTLNLNLEFVYDLNHGGAIGVGGAINADPFVSCVDDYSEYESGSGLASEKKGLSLEKKGLSIREASLVRRVRRRKKVEAISDEEDLIEKEIWRMMMRKGKR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03252 342 Gene3D AP2/ERF domain 192 248 IPR036955 GO:0003700|GO:0006355
Aip09g03252 342 MobiDBLite consensus disorder prediction 1 74 - -
Aip09g03252 342 MobiDBLite consensus disorder prediction 114 130 - -
Aip09g03252 342 CDD AP2 198 239 IPR001471 GO:0003700|GO:0006355
Aip09g03252 342 SMART rav1_2 198 253 IPR001471 GO:0003700|GO:0006355
Aip09g03252 342 PANTHER DNA-BINDING DOMAIN 198 240 IPR044808 GO:0003700|GO:0009873
Aip09g03252 342 MobiDBLite consensus disorder prediction 114 134 - -
Aip09g03252 342 ProSiteProfiles AP2/ERF domain profile. 185 249 IPR001471 GO:0003700|GO:0006355
Aip09g03252 342 PANTHER EREB-LIKE PROTEIN 198 240 - -
Aip09g03252 342 MobiDBLite consensus disorder prediction 10 24 - -
Aip09g03252 342 SUPERFAMILY DNA-binding domain 196 240 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03252 Aip-Chr9 138420719 138424378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03252 198 247 AP2-EREBP Transcription Factor Family AT3G16770 64.000 2.97e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03252 K09286 - gmx:100819416 84.3445