Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03249 ATGCTTCTAACCCGCCACGACAACCGCGCTACCAACCCAACCCGAACCCGACCCGTTCCAAACCCTGACCAATCCTCCATCTCCGTCGTAGATGCCAGCTGGTCCTCCGATCCCAACCTCAAGATCTCTCTTACCGAGCTCGCACGCGCCACTGAAAACTTCTCTCCAAATCTCATCGTCGGCGACGGCAGCTTTGGCCTCGTCTATAAGGCCCGCCTCAACGACGGCACCGTCGTCGCCGTCAAGAAGCTCTCCCCGGACGCTTTCCAAGGCTTCCGCGAGTTCCAGGCCGAGATGGAAACTCTAAGCAAGCTCGATCACCCAAACATCGTCAAGATCCTCGGCTACTGGTCCTCCGGGCCCGAACGCTTACTCGTCTACGAGTTCATCGAACGGGGAAACCTCGATCAGTGGCTCCACGAGCCCACCACTGGGCCCAACGACCACATCTCCCTCAGCGACCTCCGTTTACCTCTGTCATGGGAAACCAGGGTCAACATCATTAGAGGCGTGGCCCACGGGCTTTGCTATCTCCACGGGCTTGATAAGCCCATCATACACAGGGACATCAAAGCCAGTAACGTGTTATTGGACTCCGAGTTCAAGGCCCATATAGCTGATTTCGGGCTTGCTCGGAGGATTGACACGTCCAAATATTCACACGTGTCAACGCAGTTTGCTGGGACCATGGGCTACATGCCCCCGGAGTATGTTGCTGGGGCCAATGTGGCCAACCAGAAGGTGGATGTGTATAGCTTTGGGATTTTGATGCTTGAGACGGGCTCAGGGCGCAGGACTAATTTGCCAGTGAAGTTAGGGGAGGAAGATATTGGGCTGGTCCAGTGGGCCCGGAAGATAAAGGAGCAAAATAGTGAGATGAATATTGTTGATGTGAATATTTCAAGGGAAGGTTTAAGGGAAGAGTGTGTTAAAGAGTATGTGAGGATTGCTTGCATGTGCACTGCTGAGTTGCAGAAGGAAAGGCCTGAGATGCCTGAGGTTGTTCGCTTGTTGGATTCCATGCCGCTCTGA 1032 0.5417 MLLTRHDNRATNPTRTRPVPNPDQSSISVVDASWSSDPNLKISLTELARATENFSPNLIVGDGSFGLVYKARLNDGTVVAVKKLSPDAFQGFREFQAEMETLSKLDHPNIVKILGYWSSGPERLLVYEFIERGNLDQWLHEPTTGPNDHISLSDLRLPLSWETRVNIIRGVAHGLCYLHGLDKPIIHRDIKASNVLLDSEFKAHIADFGLARRIDTSKYSHVSTQFAGTMGYMPPEYVAGANVANQKVDVYSFGILMLETGSGRRTNLPVKLGEEDIGLVQWARKIKEQNSEMNIVDVNISREGLREECVKEYVRIACMCTAELQKERPEMPEVVRLLDSMPL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03249 343 PIRSF ILK 35 343 - -
Aip09g03249 343 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 10 340 - -
Aip09g03249 343 ProSiteProfiles Protein kinase domain profile. 54 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03249 343 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Aip09g03249 343 PANTHER OS01G0253100 PROTEIN 10 340 IPR045271 GO:0004714|GO:0006468
Aip09g03249 343 SMART serkin_6 54 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03249 343 MobiDBLite consensus disorder prediction 1 28 - -
Aip09g03249 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Aip09g03249 343 Pfam Protein tyrosine and serine/threonine kinase 60 338 IPR001245 GO:0004672|GO:0006468
Aip09g03249 343 CDD STKc_IRAK 60 341 - -
Aip09g03249 343 Gene3D Phosphorylase Kinase; domain 1 21 129 - -
Aip09g03249 343 Gene3D Transferase(Phosphotransferase) domain 1 130 342 - -
Aip09g03249 343 SUPERFAMILY Protein kinase-like (PK-like) 24 337 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03249 Aip-Chr9 138325461 138327695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03249 30 338 Receptor kinase-like Gene Family AT5G07280 43.871 6.68e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Aip09g03249 PK_Tyr_Ser-Thr 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03249 - - lang:109335579 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03249 09 138325461 138327695 Aip09g03249 09 138325461 138327695 ECH