Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03238 ATGTCAGCATTGTGCTTGCCGAGATGTGCTCTGGCGAACTCGTGGGTTGGAGCAGAGTTTGTTGGAACATTCATACTGATATTTGCAGCAACAGCAGGGCCCATTGTGAACAACAAGTACAACGGAGCAGAGACTCTAATGGGCAACGCTGCATGCGCCGGCCTCACCGTCATGTTCATAATCCTCTCAATTGGTCACATCTCCGGCGCCCATCTCAATCCATCCCTCACCATCGCCTTCGCCGCGTTTCGCCACTTCCCATGGACTCATGTCCCTGCCTACATTGCCGCGCAAGTCTCTGCCTCCATTTGCGCCTGCTTTGCTCTCAAGGGCGTTTACCACCCTTACCTCTCCGGCGGCGTCACCGTGCCTTCTAACATCACTGTTGGCCAGGCCTTTGCCACTGAATTCATCATCACTTTCATTCTCATGTTTGTTGTAACTGCCGTTGCCACTGATACTCGTGCTGTTGGAGAGTTGGCTGGTATAGCTGTTGGTGCCACTGTTTTGCTCAACATTCTCATTTCAGGGCCAACAAGCGGCGGTTCGATGAATCCGGTTCGAACGTTGGGTCCAGCGGTAGCCGCAGGGAATTACAAACACATATGGCTGTACTTGGTGGCGCCAACACTGGGTGCCCTTGCAGGCGCCGGCGTTTATACGCTGGTTAAGCTGCAGGAAAGCGATGCTCATCCGCCGCGACAGACTAGGAGCTTCCGTGACAGGGCAGGCTAG 735 0.5429 MSALCLPRCALANSWVGAEFVGTFILIFAATAGPIVNNKYNGAETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTHVPAYIAAQVSASICACFALKGVYHPYLSGGVTVPSNITVGQAFATEFIITFILMFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWLYLVAPTLGALAGAGVYTLVKLQESDAHPPRQTRSFRDRAG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03238 244 PANTHER AQUAPORIN NIP2-1 14 238 IPR034294 -
Aip09g03238 244 Pfam Major intrinsic protein 18 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip09g03238 244 ProSitePatterns MIP family signature. 71 79 IPR022357 -
Aip09g03238 244 PANTHER AQUAPORIN NIP5-1-RELATED 14 238 - -
Aip09g03238 244 Gene3D Glycerol uptake facilitator protein. 12 237 IPR023271 -
Aip09g03238 244 PRINTS Major intrinsic protein family signature 90 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip09g03238 244 PRINTS Major intrinsic protein family signature 14 33 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip09g03238 244 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip09g03238 244 PRINTS Major intrinsic protein family signature 135 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip09g03238 244 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip09g03238 244 PRINTS Major intrinsic protein family signature 166 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aip09g03238 244 SUPERFAMILY Aquaporin-like 16 232 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03238 Aip-Chr9 138188629 138193506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03238 16 240 Major Intrinsic Protein MIP AT4G10380 81.333 2.66e-131 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03238 K09874 - gmx:100804356 414.075