Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03224 ATGGCGGCAGCGGCAGCGATTTCTGCACCGGTGGCTCAGTCTACGGCGGCTCCGGCGGCGGCATTGGGCGTAGGGCCATTCTCCAATGCATCCCTGTACGTAGGGGATCTGGAGGGGAACGTGAACGAGGCGCAGCTTTATGATCTGTTCAGTCAGATTGCTCCGGTTGTCTCGATTAGGGTTTGCAGGGATCTTACGAAGCGATCCTCTCTTGGTTACGCTTATGTCAACTATTCCAGCTATGAACATGCTGCAAACGCCATGGAGCTTCTGAACTTTACTCATTTGAATGGGAAACCCATTCGAATTATGTTTTCCCAACGTGATCCTAGCATTCGGAAAAGTGGATTTGCCAATGTGTTCATCAAGAACCTTGACACGTCAATCGACAACAAGGCATTACATGACACATTTGCTACTTTTGGAACTGTGCTTTCTTGCAAGGTTGCCATTGATAGCAATGGAAATTCAAAAGGCTATGGTTTTGTACAATTTGAAAAGGAAGAAGCCGCTCAAAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAGGTTTTTGTGGGACTCTTTGTTCGACGCCAGGAAAGGGCTCAAACAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTGTCTGAAACACAAACTGATGACAACTTGAAGCAACTGTTTAGCCCATATGGTACAATAACAAGTGCAACAGTTATGAAAGATATGAATGGGAAGTCTAGATGTTTTGGTTTTGTTAATTTCCAGAGTCCGGATTCAGCGGCTGCTGCAGTTGAGAAGTTAAATGGAACTACGATCAATGATGACAAGGTTTTATACGTGGGGAGAGCTCAGAGGAAAGCTGAAAGAGAGGCAGAGTTGAAAGCCAAATTTGAGCAGGAAAGATTAAGCAGATATGAGAAGTTACAAGGTGCAAACTTGTACTTGAAAAATCTTGATGACAGCATCAGCGATGAGAGGTTGAAGGATCTATTTTCTGAATTTGGAACAATAACATCTTGCAAGGTAATGCTTGATCCACATGGACATAGCAGGGGGTCTGGTTTTGTTGCATTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGGAAGTTGGTTGGGCGGAAGCCTCTGTATGTTGCTGTAGCCCAGCGCAAAGATGAGAGGAAAGCTCGTCTACAGGCTCAGTTTGCTCAAATGCAGTCACCTGGTGGAATATCACCTTTGCCCTCAGGAATTCCTGGGTATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAGCTGTATTTTGGTCAAGGAACACCTGGCTTCATGCCGCCACAACCTGCTGGCTTTGGTTTCCAGCAGCAAATCTTGCCTGGAATGCGGCCTGGCGTTGCTCCAAATTTTGTTATGCCATACCACCTTCAGAGACAGGGTCAACCCGGGCAGAGGATGGGCATTCGACGAGGGGGAAACCTCCAACAAGTGCAGCAGAACCAGATGCTGCATCGCAACTCCAACCAAGGGTTTAGATATATGGGCAATGGCAGAAATGGTATGGATCCATCCGTTCCTCAAGGTCTAGTTGGTCCAATGATGCCCATGTCCTTTGATGGATCTGTATCTCCTATTGATAACCAGCGCCCTGGAACATTGTCTACCACCCTTGCCTCTGCTCTGGCTTCTGCAACCCCAGAAAATCAGCGAGTGATGCTGGGTGAACATCTGTATCCTCTTGTGGAGCGTCTTACTCCAACTCAACACACGGCAAAGGTGACGGGCATGTTGCTGGAAATGGACCAGTCAGAGGTAATCCATCTCATTGAGTCCCCTGAGGACCTAAAGATTAAGGTCTCCGAGGCAATGCAGGTCCTTCGCGAAGCTGCCACGGGTTCTGATGTTGGTGATCAGCTGGGCTCATTGTCATTGAATTAA 1932 0.4674 MAAAAAISAPVAQSTAAPAAALGVGPFSNASLYVGDLEGNVNEAQLYDLFSQIAPVVSIRVCRDLTKRSSLGYAYVNYSSYEHAANAMELLNFTHLNGKPIRIMFSQRDPSIRKSGFANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAIDSNGNSKGYGFVQFEKEEAAQNAIKQLNGMLINDKQVFVGLFVRRQERAQTNGSPKFTNVYVKNLSETQTDDNLKQLFSPYGTITSATVMKDMNGKSRCFGFVNFQSPDSAAAAVEKLNGTTINDDKVLYVGRAQRKAEREAELKAKFEQERLSRYEKLQGANLYLKNLDDSISDERLKDLFSEFGTITSCKVMLDPHGHSRGSGFVAFSTPEEASKALNEMNGKLVGRKPLYVAVAQRKDERKARLQAQFAQMQSPGGISPLPSGIPGYHPGAPRLAPQQLYFGQGTPGFMPPQPAGFGFQQQILPGMRPGVAPNFVMPYHLQRQGQPGQRMGIRRGGNLQQVQQNQMLHRNSNQGFRYMGNGRNGMDPSVPQGLVGPMMPMSFDGSVSPIDNQRPGTLSTTLASALASATPENQRVMLGEHLYPLVERLTPTQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAATGSDVGDQLGSLSLN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03224 643 CDD RRM3_I_PABPs 208 288 - -
Aip09g03224 643 Gene3D - 309 412 IPR012677 -
Aip09g03224 643 CDD RRM4_I_PABPs 312 390 - -
Aip09g03224 643 PANTHER RNA BINDING PROTEIN 26 632 - -
Aip09g03224 643 PANTHER POLYADENYLATE-BINDING PROTEIN 26 632 - -
Aip09g03224 643 Gene3D - 193 305 IPR012677 -
Aip09g03224 643 CDD RRM1_I_PABPs 31 110 - -
Aip09g03224 643 SMART rrm1_1 31 104 IPR000504 GO:0003723
Aip09g03224 643 SMART rrm1_1 119 191 IPR000504 GO:0003723
Aip09g03224 643 SMART rrm1_1 210 283 IPR000504 GO:0003723
Aip09g03224 643 SMART rrm1_1 314 386 IPR000504 GO:0003723
Aip09g03224 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Aip09g03224 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Aip09g03224 643 SMART rrm2_1 210 282 IPR003954 GO:0003676
Aip09g03224 643 SMART rrm2_1 31 104 IPR003954 GO:0003676
Aip09g03224 643 SMART rrm2_1 314 386 IPR003954 GO:0003676
Aip09g03224 643 SMART rrm2_1 119 191 IPR003954 GO:0003676
Aip09g03224 643 CDD RRM2_I_PABPs 116 191 IPR045305 -
Aip09g03224 643 Coils Coil 282 310 - -
Aip09g03224 643 Gene3D - 118 192 IPR012677 -
Aip09g03224 643 SUPERFAMILY PABC (PABP) domain 496 628 IPR036053 GO:0003723
Aip09g03224 643 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 629 IPR002004 GO:0003723
Aip09g03224 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 187 IPR000504 GO:0003723
Aip09g03224 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Aip09g03224 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Aip09g03224 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Aip09g03224 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Aip09g03224 643 SUPERFAMILY RNA-binding domain, RBD 208 394 IPR035979 GO:0003676
Aip09g03224 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Aip09g03224 643 SMART poly_2 563 627 IPR002004 GO:0003723
Aip09g03224 643 Gene3D - 25 117 IPR012677 -
Aip09g03224 643 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Aip09g03224 643 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Aip09g03224 643 Gene3D - 550 629 - -
Aip09g03224 643 Pfam Poly-adenylate binding protein, unique domain 559 624 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03224 Aip-Chr9 138029120 138033815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03224 29 638 Eukaryotic Initiation Factors Gene Family AT1G71770 59.455 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03224 K13126 - gmx:100783163 1050.43