Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip09g03224 | ATGGCGGCAGCGGCAGCGATTTCTGCACCGGTGGCTCAGTCTACGGCGGCTCCGGCGGCGGCATTGGGCGTAGGGCCATTCTCCAATGCATCCCTGTACGTAGGGGATCTGGAGGGGAACGTGAACGAGGCGCAGCTTTATGATCTGTTCAGTCAGATTGCTCCGGTTGTCTCGATTAGGGTTTGCAGGGATCTTACGAAGCGATCCTCTCTTGGTTACGCTTATGTCAACTATTCCAGCTATGAACATGCTGCAAACGCCATGGAGCTTCTGAACTTTACTCATTTGAATGGGAAACCCATTCGAATTATGTTTTCCCAACGTGATCCTAGCATTCGGAAAAGTGGATTTGCCAATGTGTTCATCAAGAACCTTGACACGTCAATCGACAACAAGGCATTACATGACACATTTGCTACTTTTGGAACTGTGCTTTCTTGCAAGGTTGCCATTGATAGCAATGGAAATTCAAAAGGCTATGGTTTTGTACAATTTGAAAAGGAAGAAGCCGCTCAAAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAGGTTTTTGTGGGACTCTTTGTTCGACGCCAGGAAAGGGCTCAAACAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTGTCTGAAACACAAACTGATGACAACTTGAAGCAACTGTTTAGCCCATATGGTACAATAACAAGTGCAACAGTTATGAAAGATATGAATGGGAAGTCTAGATGTTTTGGTTTTGTTAATTTCCAGAGTCCGGATTCAGCGGCTGCTGCAGTTGAGAAGTTAAATGGAACTACGATCAATGATGACAAGGTTTTATACGTGGGGAGAGCTCAGAGGAAAGCTGAAAGAGAGGCAGAGTTGAAAGCCAAATTTGAGCAGGAAAGATTAAGCAGATATGAGAAGTTACAAGGTGCAAACTTGTACTTGAAAAATCTTGATGACAGCATCAGCGATGAGAGGTTGAAGGATCTATTTTCTGAATTTGGAACAATAACATCTTGCAAGGTAATGCTTGATCCACATGGACATAGCAGGGGGTCTGGTTTTGTTGCATTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGGAAGTTGGTTGGGCGGAAGCCTCTGTATGTTGCTGTAGCCCAGCGCAAAGATGAGAGGAAAGCTCGTCTACAGGCTCAGTTTGCTCAAATGCAGTCACCTGGTGGAATATCACCTTTGCCCTCAGGAATTCCTGGGTATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAGCTGTATTTTGGTCAAGGAACACCTGGCTTCATGCCGCCACAACCTGCTGGCTTTGGTTTCCAGCAGCAAATCTTGCCTGGAATGCGGCCTGGCGTTGCTCCAAATTTTGTTATGCCATACCACCTTCAGAGACAGGGTCAACCCGGGCAGAGGATGGGCATTCGACGAGGGGGAAACCTCCAACAAGTGCAGCAGAACCAGATGCTGCATCGCAACTCCAACCAAGGGTTTAGATATATGGGCAATGGCAGAAATGGTATGGATCCATCCGTTCCTCAAGGTCTAGTTGGTCCAATGATGCCCATGTCCTTTGATGGATCTGTATCTCCTATTGATAACCAGCGCCCTGGAACATTGTCTACCACCCTTGCCTCTGCTCTGGCTTCTGCAACCCCAGAAAATCAGCGAGTGATGCTGGGTGAACATCTGTATCCTCTTGTGGAGCGTCTTACTCCAACTCAACACACGGCAAAGGTGACGGGCATGTTGCTGGAAATGGACCAGTCAGAGGTAATCCATCTCATTGAGTCCCCTGAGGACCTAAAGATTAAGGTCTCCGAGGCAATGCAGGTCCTTCGCGAAGCTGCCACGGGTTCTGATGTTGGTGATCAGCTGGGCTCATTGTCATTGAATTAA | 1932 | 0.4674 | MAAAAAISAPVAQSTAAPAAALGVGPFSNASLYVGDLEGNVNEAQLYDLFSQIAPVVSIRVCRDLTKRSSLGYAYVNYSSYEHAANAMELLNFTHLNGKPIRIMFSQRDPSIRKSGFANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAIDSNGNSKGYGFVQFEKEEAAQNAIKQLNGMLINDKQVFVGLFVRRQERAQTNGSPKFTNVYVKNLSETQTDDNLKQLFSPYGTITSATVMKDMNGKSRCFGFVNFQSPDSAAAAVEKLNGTTINDDKVLYVGRAQRKAEREAELKAKFEQERLSRYEKLQGANLYLKNLDDSISDERLKDLFSEFGTITSCKVMLDPHGHSRGSGFVAFSTPEEASKALNEMNGKLVGRKPLYVAVAQRKDERKARLQAQFAQMQSPGGISPLPSGIPGYHPGAPRLAPQQLYFGQGTPGFMPPQPAGFGFQQQILPGMRPGVAPNFVMPYHLQRQGQPGQRMGIRRGGNLQQVQQNQMLHRNSNQGFRYMGNGRNGMDPSVPQGLVGPMMPMSFDGSVSPIDNQRPGTLSTTLASALASATPENQRVMLGEHLYPLVERLTPTQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAATGSDVGDQLGSLSLN | 643 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip09g03224 | 643 | CDD | RRM3_I_PABPs | 208 | 288 | - | - | |
Aip09g03224 | 643 | Gene3D | - | 309 | 412 | IPR012677 | - | |
Aip09g03224 | 643 | CDD | RRM4_I_PABPs | 312 | 390 | - | - | |
Aip09g03224 | 643 | PANTHER | RNA BINDING PROTEIN | 26 | 632 | - | - | |
Aip09g03224 | 643 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 26 | 632 | - | - | |
Aip09g03224 | 643 | Gene3D | - | 193 | 305 | IPR012677 | - | |
Aip09g03224 | 643 | CDD | RRM1_I_PABPs | 31 | 110 | - | - | |
Aip09g03224 | 643 | SMART | rrm1_1 | 31 | 104 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | SMART | rrm1_1 | 119 | 191 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | SMART | rrm1_1 | 210 | 283 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | SMART | rrm1_1 | 314 | 386 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 313 | 390 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 209 | 287 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | SMART | rrm2_1 | 210 | 282 | IPR003954 | GO:0003676 | |
Aip09g03224 | 643 | SMART | rrm2_1 | 31 | 104 | IPR003954 | GO:0003676 | |
Aip09g03224 | 643 | SMART | rrm2_1 | 314 | 386 | IPR003954 | GO:0003676 | |
Aip09g03224 | 643 | SMART | rrm2_1 | 119 | 191 | IPR003954 | GO:0003676 | |
Aip09g03224 | 643 | CDD | RRM2_I_PABPs | 116 | 191 | IPR045305 | - | |
Aip09g03224 | 643 | Coils | Coil | 282 | 310 | - | - | |
Aip09g03224 | 643 | Gene3D | - | 118 | 192 | IPR012677 | - | |
Aip09g03224 | 643 | SUPERFAMILY | PABC (PABP) domain | 496 | 628 | IPR036053 | GO:0003723 | |
Aip09g03224 | 643 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 551 | 629 | IPR002004 | GO:0003723 | |
Aip09g03224 | 643 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 120 | 187 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 32 | 102 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 315 | 383 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 211 | 278 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 30 | 108 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 394 | IPR035979 | GO:0003676 | |
Aip09g03224 | 643 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 195 | IPR000504 | GO:0003723 | |
Aip09g03224 | 643 | SMART | poly_2 | 563 | 627 | IPR002004 | GO:0003723 | |
Aip09g03224 | 643 | Gene3D | - | 25 | 117 | IPR012677 | - | |
Aip09g03224 | 643 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676 | |
Aip09g03224 | 643 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 625 | IPR006515 | GO:0003723 | |
Aip09g03224 | 643 | Gene3D | - | 550 | 629 | - | - | |
Aip09g03224 | 643 | Pfam | Poly-adenylate binding protein, unique domain | 559 | 624 | IPR002004 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip09g03224 | Aip-Chr9 | 138029120 | 138033815 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip09g03224 | 29 | 638 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 59.455 | 0.0 | 719 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip09g03224 | K13126 | - | gmx:100783163 | 1050.43 |