Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03213 ATGGCCTCCTCCCAGCATCGCTGCGTTTTCGTTGGCAATATACCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGATAGAGAAACTGGGAAGCCAAAGGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTGAGTGCTCGGCGGAATCTTCAGGGTTATGAAATTAACGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAGCAGGGTCGTGGAGGGCCTGGACTGTCAGCAAATGTTGACCCTCAGAAACATGTAGGAAGCAGCTCAGTTATCCAAGGGGATGCTGCTCATCATCAACCTATTGGTCTCCATATTGCCATAACAGCTGCGTCTGTCATGACAGCAGCTCTAGGTGGGGCTCAGTTTGGCGTCCAGTCGGCTCAAAATGGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCGTTAACTCTGCACCTTGCTAAAATGTCAAGGAATCAGTTAAATGAGATAATCTCTGAGGTCAAGGCAATGGCTACACAGAATAAGGACATGGCTCGGCAACTGTTGCTTTCAAGACCACAGTTGCCAAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAACCTTAAGATGGTTTCGGAGCAGGCCTCACAATCTTCAGTAAATGAAGGCCAGCTAGGTCAGCCGGCATTAGTTCAGACTCTGTCTGGCCTACCCCAGAGCTTGGGACAGAGTACATTGCAGCCTGGTTTGACACCTTATGTTCAAGAAAGTCAAGCGAACGTCATGCCCCATAATCCTTTGGTTCCTAATCAATTGAATGCACATCCAAGGCCTCCGTTGCAGCCTAGAGTGCCACTTCAACAACATTCAATCAACCATGTTGGACAGTTGGGAACGCTGTCAGGGCAGTCAAATTTAATGCCTCCTTCAGCACGACCCCAGTCATTGGGGGGTTTGTCTATGAGGCCCTCAGTTCAATCTTCAATGTCGACTGCCCCGAACCAGCAAAGGCATGCCCCTTTGCCACCACATTCAGCACTTGTTGGAAGCTCAACTGTAGGACATAATATTCAAATGGTTCGACCAGATGCAAGCTTTCAGCCTAGCCCCTCTGTATCATCAGGAATTCCTCACTTAATTAGTAAGGAAGGTGATAGATCTGCATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAATATGGTTCATGGTTTGTCTGAATCGTTGGGTCGCCCTTCAAAGCTCATGAAATTGGATGACGGAAGGAGTACGCCTTTTCCTTTTGCTGATGTGCCTGTGACCAATGGTTCATCCCACATTCTTGGAAGCAACTCGTTGCCTGCTCTTGCAGCTCCTAAAACAGAAGTGCCTGCTCAGCTTCCAGCAGATGTAGAGTCTGCTTTACTGCAACAAGTGTTGAATCTAACACCGGAGCAATTGAGTTCGCTGCCGCCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTACGGCGAGATCAGATGCAGTCCTCATAG 1596 0.4743 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLSANVDPQKHVGSSSVIQGDAAHHQPIGLHIAITAASVMTAALGGAQFGVQSAQNGLQSQSALAHDPLTLHLAKMSRNQLNEIISEVKAMATQNKDMARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLKMVSEQASQSSVNEGQLGQPALVQTLSGLPQSLGQSTLQPGLTPYVQESQANVMPHNPLVPNQLNAHPRPPLQPRVPLQQHSINHVGQLGTLSGQSNLMPPSARPQSLGGLSMRPSVQSSMSTAPNQQRHAPLPPHSALVGSSTVGHNIQMVRPDASFQPSPSVSSGIPHLISKEGDRSAYSNMPLGVEKTNMVHGLSESLGRPSKLMKLDDGRSTPFPFADVPVTNGSSHILGSNSLPALAAPKTEVPAQLPADVESALLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQSS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03213 531 MobiDBLite consensus disorder prediction 81 115 - -
Aip09g03213 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Aip09g03213 531 Pfam Transcription termination and cleavage factor C-terminal 492 525 IPR026896 GO:0031124
Aip09g03213 531 MobiDBLite consensus disorder prediction 323 365 - -
Aip09g03213 531 Gene3D - 1 113 IPR012677 -
Aip09g03213 531 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 2 526 - -
Aip09g03213 531 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 526 - -
Aip09g03213 531 CDD RRM_CSTF2_CSTF2T 9 83 - -
Aip09g03213 531 SMART rrm1_1 8 81 IPR000504 GO:0003723
Aip09g03213 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Aip09g03213 531 Gene3D - 487 527 IPR038192 -
Aip09g03213 531 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 229 IPR025742 -
Aip09g03213 531 Gene3D - 157 231 - -
Aip09g03213 531 MobiDBLite consensus disorder prediction 323 363 - -
Aip09g03213 531 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03213 Aip-Chr9 137842145 137847688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03213 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.68e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03213 K14407 - gmx:100794399 739.184