Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03189 ATGAGCTATCAAGTTTCAAAATTCTCAATCCCACCTTTTCTCACTCTCTTCTCTGAGCTATCAAGGGTTAAAGATCAGAAAAAGAAGGTAAAATTTGTTGGAATTTTTTGTAATAATTTTTTGAAAGAAATAATCGTGGTTCTCTTCGATAATCGTTGCCACATCTTTCATCAGATAGAGATGGAAACTACAGAAGCGGGTTCAGCTAATGACGATGATGGTAGCTTGGACCAAGAGATAGGAACAAAAAAATGTCAATGTGGTGACTGCAAGCAGTGTGGAGTTGTTACTGTTGAAGATATTATCAATCATATATTTTCAACATTTGAGGTAGCATATGATATGTATGTGAGATATGCCAAATGTGTGGGTTTTGGAGTTTGGAAAGGCCACTTTGTGAAAACTAAAGATGGTTGTTACTCAAAGCGAAAGTTCTTTTGTAACAAGGCCGGATTGAGAGAGAAGAAATACTATGACAATGTTTCACGAAAAAGGGAACAAAGGGCTGAGACACAAACTAATTGTCAAGCTAAATTGTATTTATACTTTGATAAAAGTGCAAATGTTTGGAGGGTTAAGAATTTGTTCGATGAACATAACCATGACTTAGTACCACAATGCATGGTTCACCTAATTCCGAACCATCGGCAGTTGACTGATGCAAACAAGGCACAAGCTGACATCATGCATATGTATGGTGTGCCAACATCTCAAATTATGGGGTTTATGGCTGGTCAAGCTGGTGGGGACAGCATTTTAGAGTTGGTGGAGAATCTTGAACAGGCTCTACGAGATTATCGCAACAATGAGATGGTTGCTCAATTCAAGACAATCAATTCTGATCCTGTTTTGACAACTGGCTTACAGTCTCTCAAACTTTGTGCTGCAAACATCTACACTAGAGAGATATTCAAACTAGTGAGGAAGCAAATTGAAGAAGTGATTTCTTTAGACATTATATATAGTCAGCCCCTTTCCACAACTATGGTATATAAGATTTGTGCTTTTCAAAAGAGAGTCAAAATATTTATAGTTGTATATGATCGCAATGAGAAGAAATTAGAGTGTGAATGCTGTCATTGGGATCATGAAGGGTATCCTTGTAGTCATATGTTGTGTGTGCTGAGACGAGAGGATATAGATGAATTGCCAAAAAGTCTAATTCTAAAAAGATGGACTCGAGATGCAAAAAAGTATACTAATGATCAAATAGTCGAAAGCACTGCAAATGATGCTAAAAAAAGTTTTTTAATGAGATATGGTGCTATGTCAGTTGCCACAATGTGGATGTCATTTCTTGCAGCTCAAGAAGTTTCACTTTTTGGTGATACAATGAATGAAGTGACTAGATGGACCAAAGATCTAGAGAAAAAGTGCAGCATTAAAAAACAAAATGGGATTACTGATGTATTGCATCCTGTTGCTGAATTTGTTGGTGATCTTTGTGTCGCTAAGACTAAAGGTACACCCAAACTCAAGAAGAGTGAAACTAGAAAAAGGTCATGTTCAAATTGCCTCATGAAGGGTCATACAAAGAGGCATTGTCCAAAATTGGTTGATGAAGGTGACCGGAGCCATGACCATGTCCCTTTTCGATGTACAAACACAGATGAGGTAGCAAAAGAGACTTCTGGTGCCACTAGGAGTGACAATAATGGGCGCAATTGTACTGCAGATTCTAGTACTAAGCTCATGGGTTCTCAATCAAATTTGGTAGAGGCGGGTATAGGAACGTTTTCAGGAGTCCAATTTTATCCAACTCCTAGTAACTTGTTCCAAATACCACAGGGAGTAGTAGTTGGCCAACCAACCACTCTGCAAAATATTAGACATCAATGGCTCTTACAGGCCATGAAAGCTAGGAATACTTGGAAGCAATAA 1881 0.3801 MSYQVSKFSIPPFLTLFSELSRVKDQKKKVKFVGIFCNNFLKEIIVVLFDNRCHIFHQIEMETTEAGSANDDDGSLDQEIGTKKCQCGDCKQCGVVTVEDIINHIFSTFEVAYDMYVRYAKCVGFGVWKGHFVKTKDGCYSKRKFFCNKAGLREKKYYDNVSRKREQRAETQTNCQAKLYLYFDKSANVWRVKNLFDEHNHDLVPQCMVHLIPNHRQLTDANKAQADIMHMYGVPTSQIMGFMAGQAGGDSILELVENLEQALRDYRNNEMVAQFKTINSDPVLTTGLQSLKLCAANIYTREIFKLVRKQIEEVISLDIIYSQPLSTTMVYKICAFQKRVKIFIVVYDRNEKKLECECCHWDHEGYPCSHMLCVLRREDIDELPKSLILKRWTRDAKKYTNDQIVESTANDAKKSFLMRYGAMSVATMWMSFLAAQEVSLFGDTMNEVTRWTKDLEKKCSIKKQNGITDVLHPVAEFVGDLCVAKTKGTPKLKKSETRKRSCSNCLMKGHTKRHCPKLVDEGDRSHDHVPFRCTNTDEVAKETSGATRSDNNGRNCTADSSTKLMGSQSNLVEAGIGTFSGVQFYPTPSNLFQIPQGVVVGQPTTLQNIRHQWLLQAMKARNTWKQ 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03189 626 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 98 216 - -
Aip09g03189 626 ProSiteProfiles Zinc finger SWIM-type profile. 343 379 IPR007527 GO:0008270
Aip09g03189 626 Pfam FAR1 DNA-binding domain 115 205 IPR004330 -
Aip09g03189 626 SMART 26again6 354 381 IPR006564 GO:0008270
Aip09g03189 626 Coils Coil 249 269 - -
Aip09g03189 626 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 251 473 - -
Aip09g03189 626 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 251 473 IPR031052 GO:0006355
Aip09g03189 626 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 98 216 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03189 Aip-Chr9 137292993 137296870 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip09g03189 FAR1 6.6e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03189 - - aip:107636930 671.003