Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03127 ATGGACGGTAGTAATGGTGGGGTTGACCAATTTTGGAGCATCCATTCTTTCTTCAATCAGTCACTGATCTTTGATTCTTTGGTAGGTTTTACATGGATCCAAAAGGGAGCCTGTGTTCTAACAACTGGGCTAGCGCCTTTCAAAGACTTCAACCAACCCTCTACTAACCAGTCTTTGCTTATGGCGGAGCCAAACAAGGATATTAAGATTTCTGATATAGAGAACTGTCCACTGACTGACTCATCATCGCAAACCGGTAAACTTCAAGATTGGGATCCGAATGTGATGTTAAATAACCTTTCCTTTCTGGAAGAAAAGATTCATCAGCTCCAGGGTCTTGTTCATTTGATTGATAATAAGAAGTGTCAACCTTTTGCGCAACCTGATGCGCTTGTGACACAGGAGCAGCAACTCATCACAGCCGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGTAGTCTTCTCCCGTCCGTTAGGCACACTCTCGCAAACACAAGTCCATTGGTCAGTCAGCTTAGCCAGCTTCGTGGCCTTAACCTTCCTTTTGGATCCGGCCCCAGTGGTGGTATTCAGCCACAAAATAATAATGTAAATAAAGTGTTTGATCAGTCCACTCAGAATGATGTACCTAATAATTGTGAAGTGGAGCAAAACAACATGGAAGAGCATGAAACAAAAGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCACCTGGTTCCTATGAGATTTTGCAGTTAGAGAAAGAAGAAATCCTTGCACCCCATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGGGATGCGAATCTTCGCATGCACATGCGGGGACATGGGGATGAGTACAAAACCCCGGCGGCTCTTGCAAAGCCACATAAAGAAACCGGATCCGAACCAAAGCTCATCAAGAGGTATTCCTGTCCCTATGCCGGCTGCAAGCGAAATAAGGATCACAAGAAGTTCCAACCTTTAAAGACCATTTTATGTGTTAAAAACCACTACAAAAGGACGCATTGCGACAAGAGTTACACTTGTAGCAGATGCCACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGCGGTACAACATTTTCGAGGAAGGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCTGCAATTCCTTTGGAAGAAACTAAAGTACCGGCGGCTCCAACCGATCTTGACAGCAAAGATAACACATGTGATAAGGTTGGAAATATGAACTTCTGTTTCGGATCAAATCCTCCAAATGAAAATGAAGTTCAAAACATCATGGATGTGAAGGGTAACATTGATGATCCAATTAATTATTTCTCATCATTGAACTTTGAAGGTTGCAACTTTGGTGGGTTTAATGAATTCTCCCAGTCTCCATTTGAAGATTCAGATGCTTCTTTCTCATTTCTTATGTCTGGATCTTTTAACTATGCTCCTAAACCAGGATGTGAATCAACTTCTGACAATCTGTAG 1542 0.4228 MDGSNGGVDQFWSIHSFFNQSLIFDSLVGFTWIQKGACVLTTGLAPFKDFNQPSTNQSLLMAEPNKDIKISDIENCPLTDSSSQTGKLQDWDPNVMLNNLSFLEEKIHQLQGLVHLIDNKKCQPFAQPDALVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLANTSPLVSQLSQLRGLNLPFGSGPSGGIQPQNNNVNKVFDQSTQNDVPNNCEVEQNNMEEHETKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKVPAAPTDLDSKDNTCDKVGNMNFCFGSNPPNENEVQNIMDVKGNIDDPINYFSSLNFEGCNFGGFNEFSQSPFEDSDASFSFLMSGSFNYAPKPGCESTSDNL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03127 513 Gene3D Classic Zinc Finger 245 315 - -
Aip09g03127 513 ProSitePatterns Zinc finger C2H2 type domain signature. 263 283 IPR013087 -
Aip09g03127 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 45 497 IPR044300 GO:0010044|GO:0010447
Aip09g03127 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 288 IPR013087 -
Aip09g03127 513 SMART c2h2final6 310 343 IPR013087 -
Aip09g03127 513 SMART c2h2final6 348 370 IPR013087 -
Aip09g03127 513 SMART c2h2final6 261 283 IPR013087 -
Aip09g03127 513 SUPERFAMILY beta-beta-alpha zinc fingers 259 286 IPR036236 -
Aip09g03127 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 45 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03127 Aip-Chr9 136523203 136525739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03127 229 511 C2H2 Transcription Factor Family AT1G34370 70.934 3.14e-141 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g03127 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03127 - - gmx:100170687 765.763