Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03125 ATGATATTGACATGGCCACAGAGGATTAACATTGCACTAGGTGTGGCTAGAGCCTTATCTTGGCTCCATCATTTATGCAATCTGCATGTGGTGCACTTGAATATTTGTTCACGGAGTATCTTGCTAGATAAGAATTTCGAACCCAAGTTATCCAATTTTGGAGATGCCAAGTTTTTGAACCCCAACAACCATGAGAGTCTAGGCATGTCGTTTTATATCAAGGATGGGAAGAAGGATGTTTATGATTTTGGTAATGTAATTTTTGAGTTGGTCACGGGAAAATTATATGAGGAATTGGTGGAGAATTCATGTAACAATGCTAATCTATCTCCTAATCCTTCAAGTTTTTATAGTGCAATTGATAAGTTTATTATTGGTGAAGGGTTTGAAAGTGAAGCGTTTATGCTCATCAAGATTGCTTGCGAGTGTGTTCAGCCTCCTATTGGGAGGTACCTTTCCTCCATTCCCTTCTATGATATCTCAGCTAAATTCAATTCCTTTATGCTTTTTTATTACTGGGTTTATCATGGGAAGGGTGTTGAGGCATCCATGGATGGGGTATTGGGAGGGTTTGCAAATGTGAACAAACCTGATATCAAATGCAGTGAGGAGTTTTTGAAGATTATTTTGTCTGAACGTTTTCCAGCTGATGCTAGACACCAACCACTTGTTGCTCTTGATTGCGGTTCTGGCATTGGCAGAATTACAAAAAATCTGTTAATAAGACACTTCAATGAGATACATGAAGAGGCTAGGAAGTTTGCATATCAAATAGGGGTTAAGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGGGGTGGACATTCTCGTCGCAACTCCTAGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTTGCACTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCCCCTCCAGGTGTAAGACAAATTACGCTATTCAGTGCCACATTTCCTAAAGAGATACAGAGACTAGCCTCCGATTTCCTGTCAAGATACATTTTTCTCGCTGTTATGAGCAAATACAtttgtttttatatttaa 1140 0.3965 MILTWPQRINIALGVARALSWLHHLCNLHVVHLNICSRSILLDKNFEPKLSNFGDAKFLNPNNHESLGMSFYIKDGKKDVYDFGNVIFELVTGKLYEELVENSCNNANLSPNPSSFYSAIDKFIIGEGFESEAFMLIKIACECVQPPIGRYLSSIPFYDISAKFNSFMLFYYWVYHGKGVEASMDGVLGGFANVNKPDIKCSEEFLKIILSERFPADARHQPLVALDCGSGIGRITKNLLIRHFNEIHEEARKFAYQIGVKVVVAYGGAPINHQLRDLEKGVDILVATPRRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQITLFSATFPKEIQRLASDFLSRYIFLAVMSKYICFYI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03125 379 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 181 255 IPR029063 -
Aip09g03125 379 Gene3D - 246 374 IPR027417 -
Aip09g03125 379 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52C 246 370 - -
Aip09g03125 379 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 246 370 - -
Aip09g03125 379 Pfam DEAD/DEAH box helicase 245 357 IPR011545 GO:0003676|GO:0005524
Aip09g03125 379 Pfam AdoMet dependent proline di-methyltransferase 178 248 IPR008576 GO:0006480|GO:0008168
Aip09g03125 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 368 IPR027417 -
Aip09g03125 379 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03125 379 Gene3D Transferase(Phosphotransferase) domain 1 1 150 - -
Aip09g03125 379 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 245 368 IPR014001 -
Aip09g03125 379 SMART ultradead3 190 378 IPR014001 -
Aip09g03125 379 SUPERFAMILY Protein kinase-like (PK-like) 3 100 IPR011009 -
Aip09g03125 379 Gene3D Vaccinia Virus protein VP39 171 245 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03125 Aip-Chr9 136492852 136495550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03125 3 144 Receptor kinase-like Gene Family AT1G69990 31.928 3.23e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aip09g03125 DEAD 1.2e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03125 K11594 - aip:107627994 297.36