Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03110 ATGAGGAGAAGATGCACTGTGGCTCTCGATGCTGTCAATTTGAACAAAAATCGATATACTGATGTGTTGCCATTTGACAATAACATGGTTGTTCTCAAGTCTAGCACGGATTATAGGCCTGAAGCACAGGGATATATCAATGCAAGCTGCATATCTGCCTCTTTGCCCGGAAATGTGTCGCAATTTATAGCCACACAAGGGCCGTTGCCTCACACATATGAGGATTTCTGGGAAATGGTAATCCAATATCATTGCCCTGCAATTGTGATGCTTACTAAGTTGGTCGACAATTACAAGACGATAAAGTGTGGAGATTACTTTCAAGCTGAGGATGGACCTAGAGAATGTGGTAATATCTCTATTATCAGTAAATGGATAAAATCTACTGAAACTTCACTGGTGTTGCGCCATTTGGAAGTAAACCATAAAGAGGCCGAAGATACACCGTTATCTGTTTTGCACATTCAGTATCCTGAATGGCCAGACCATGGAGTTCCAAGAGATACATCTGCTGTTCGTGAGATTTTTAGAAGATTGCACCATTTACCGGCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGCATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCCGCTTTAGATATCTCAAGTACAATAGCTATATTCAGGTCCCAACGAATTGGAATGGTTCAGACCCAGCTCTTCAACAAGATGAAGCGCCTCCGCATTAAACCCAACCTCCTCACCTGCCACTCCCTCCTCTCCTCCCTCGTCCGCCGCAACCCTCATTCCTCCCACTCCATTCACCTCTCCAAACAAGTCTTTAACGATTCCCTTAAGCTCGGTATAACCCCAAACACCACCACCTTCAACATCTTGATCCATGGTTCTTGTCTTGATAATAATTTTAATGATGCTCTTAGCTTCATGAACCAAATGACTGATTTTGCTTGTTCTCCTGATAACATCACTTACAATACTATTCTTGATGCATTGTGTAGGAAGGGCCAATTGAGTAAGGTTAGGGAGGTTTTGCTAGAGATGAAAGGTAGCGGGGTTTCCCCAAATAGGAACACATATAATATCTTGGTTCATGGCTATTGTAAGTTGAGGTGGTTGAAGGAGGCTGCCGAGGTTGTCGAGTTGATGAGAGCGAACAACATGGTACCGGATATTTGGACTTATAATACAATCATGAGGGGTTTGTGCGACGAGGGGAAGGTCAAGGAGGCAATTAGCCTAAGGGATGAGATGGAGAGCCTGAGGGTGATGCCGGATGAGGTTACCTACAATACTCTGATTGACGGGTGTTTTCAATGGCGGGGGAGTGTGGAGGCATTCAAGTTGGTTGAGGAAATGAAGGGAAAGGGAGTCAAGCCGAACACGGTGACTCACAATATAATGGTGAAGTGGTATTGTAAGGAAGGTAAGATGGATGAAGCCGGCTGTGTCGTGGCAAAGATGGTGGAGAGTGGGTTTTCACCGGACTGTTTTACTTATAATACTATCATCAATGGTTATTGTAAAGCAGGAAATCTGGGAGAAGCTTTTAAGATGATGGATGAAATGGGGAGGAAAGGTTTAAAGATGGATACTTTTACTCTGAACACTATAGTGCACAGATTGTGCGTGGAGAAGCTGCTCAAAGAGGCATACGAGTTGACTGTGAAGGCTGCAAAGCGAGGTTATATTCTCGATGAGGTAACCTATGGAACTCTAATCATGGGATACTTTAAAAATGAACAAACAAACAAAGCTCTGAAGCTTTGGGATGAGATGAAGGAGAAGGGGATCATTCCTAGTGTTGTCACTTATAACACTATAATTAGGGGGTTGTGCCATTCTTTAAAAACTGATCAGGCTGTAGATAAATTGAATGAGCTTTTAGATAAAGGTTTGGCCCCCGATGAAGCTACGTGTAACATAATTATTCATGGTTACTGCTGGGAGGGAGCAGTGGAGAAAGCATTCTTGTTCTATAACAGAATGGTTGAGAACTCATTCAAGCCAGATGTTATTACATGTAACATTCTTCTTCGAGGGCTTTGCAAACATGGTATGTTCGAGAAGGCCTTTAATTTATTTAACACATGGATCATTAAAGGTAAGCCCGTTGATGCAGTTACGTACAACACGTTGATTTCCGTCCTTTGCAAAGAAGGGAAACTTGATGAAGCATTTGACCTCATGACTGAGATGGTGATGAAAAAATTGGGGCCGGACCGATATACTTATACTGCCATCATTGGTGCACTTACTCATGCTGGGAGAACTGAGGAAGCAAAGAAATTCATGTCAAAACTCCTAGAGACAAGTCCAAATATGATAAGTGAAGACACTTCACAAATGCTTGGTTCAGGCGACATGGATTACTCAGAACAGATAACTAATTTTTGTACTCAAGGGAAGTACAAAGAGGCAATGAAACTATTTCAAGAATCAGAGCAGAAAGGAGTTAGTTTGCATAAATCTGCGTATTTCAAATTAATGGATGGGCTATTGAAGAGGCGAAAAAGCATATCGAAGGCCTCCTTATCAGATTGA 2568 0.4237 MRRRCTVALDAVNLNKNRYTDVLPFDNNMVVLKSSTDYRPEAQGYINASCISASLPGNVSQFIATQGPLPHTYEDFWEMVIQYHCPAIVMLTKLVDNYKTIKCGDYFQAEDGPRECGNISIISKWIKSTETSLVLRHLEVNHKEAEDTPLSVLHIQYPEWPDHGVPRDTSAVREIFRRLHHLPANLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDISSTIAIFRSQRIGMVQTQLFNKMKRLRIKPNLLTCHSLLSSLVRRNPHSSHSIHLSKQVFNDSLKLGITPNTTTFNILIHGSCLDNNFNDALSFMNQMTDFACSPDNITYNTILDALCRKGQLSKVREVLLEMKGSGVSPNRNTYNILVHGYCKLRWLKEAAEVVELMRANNMVPDIWTYNTIMRGLCDEGKVKEAISLRDEMESLRVMPDEVTYNTLIDGCFQWRGSVEAFKLVEEMKGKGVKPNTVTHNIMVKWYCKEGKMDEAGCVVAKMVESGFSPDCFTYNTIINGYCKAGNLGEAFKMMDEMGRKGLKMDTFTLNTIVHRLCVEKLLKEAYELTVKAAKRGYILDEVTYGTLIMGYFKNEQTNKALKLWDEMKEKGIIPSVVTYNTIIRGLCHSLKTDQAVDKLNELLDKGLAPDEATCNIIIHGYCWEGAVEKAFLFYNRMVENSFKPDVITCNILLRGLCKHGMFEKAFNLFNTWIIKGKPVDAVTYNTLISVLCKEGKLDEAFDLMTEMVMKKLGPDRYTYTAIIGALTHAGRTEEAKKFMSKLLETSPNMISEDTSQMLGSGDMDYSEQITNFCTQGKYKEAMKLFQESEQKGVSLHKSAYFKLMDGLLKRRKSISKASLSD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03110 855 Pfam PPR repeat family 398 445 IPR002885 -
Aip09g03110 855 Pfam PPR repeat family 643 692 IPR002885 -
Aip09g03110 855 Pfam PPR repeat family 714 760 IPR002885 -
Aip09g03110 855 Pfam PPR repeat family 328 377 IPR002885 -
Aip09g03110 855 Pfam PPR repeat family 574 622 IPR002885 -
Aip09g03110 855 ProSitePatterns Tyrosine specific protein phosphatases active site. 191 201 IPR016130 GO:0016311|GO:0016791
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Aip09g03110 855 Gene3D Tetratricopeptide repeat domain 243 393 IPR011990 GO:0005515
Aip09g03110 855 SMART ptp_7 151 252 IPR003595 -
Aip09g03110 855 Gene3D Protein tyrosine phosphatase superfamily 1 242 IPR029021 -
Aip09g03110 855 PRINTS Protein tyrosine phosphatase signature 62 82 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 PRINTS Protein tyrosine phosphatase signature 150 167 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 PRINTS Protein tyrosine phosphatase signature 44 51 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 PRINTS Protein tyrosine phosphatase signature 188 206 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 PRINTS Protein tyrosine phosphatase signature 221 236 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 751 778 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 716 749 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 297 329 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 506 540 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 436 470 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 611 645 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 647 680 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 681 705 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 471 505 IPR002885 -
Aip09g03110 855 TIGRFAM PPR: pentatricopeptide repeat domain 576 609 IPR002885 -
Aip09g03110 855 Gene3D Tetratricopeptide repeat domain 709 780 IPR011990 GO:0005515
Aip09g03110 855 Gene3D Tetratricopeptide repeat domain 424 494 IPR011990 GO:0005515
Aip09g03110 855 Gene3D Tetratricopeptide repeat domain 636 708 IPR011990 GO:0005515
Aip09g03110 855 Gene3D Tetratricopeptide repeat domain 567 635 IPR011990 GO:0005515
Aip09g03110 855 Gene3D Tetratricopeptide repeat domain 495 566 IPR011990 GO:0005515
Aip09g03110 855 CDD PTPc_plant_PTP1 45 241 - -
Aip09g03110 855 Pfam Protein-tyrosine phosphatase 13 241 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 Pfam PPR repeat 804 827 IPR002885 -
Aip09g03110 855 Pfam PPR repeat 290 322 IPR002885 -
Aip09g03110 855 Pfam PPR repeat 464 489 IPR002885 -
Aip09g03110 855 Pfam PPR repeat 500 531 IPR002885 -
Aip09g03110 855 PANTHER ATPASE EXPRESSION PROTEIN 3 226 850 - -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 783 IPR002885 -
Aip09g03110 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 226 850 - -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 644 678 IPR002885 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Aip09g03110 855 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 241 IPR000387 GO:0016311|GO:0016791
Aip09g03110 855 ProSiteProfiles PTP type protein phosphatase domain profile. 1 240 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 713 IPR002885 -
Aip09g03110 855 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 241 IPR029021 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 643 IPR002885 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Aip09g03110 855 SMART PTPc_3 1 267 IPR000242 GO:0004725|GO:0006470
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Aip09g03110 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Aip09g03110 855 SUPERFAMILY HCP-like 556 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03110 Aip-Chr9 136293999 136299286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03110 6 240 Protein tyrosine phosphatase (PTP) family AT1G71860 72.340 2.26e-124 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03110 - - ahf:112722869 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03110 09 136293999 136299286 Aip09g03110 09 136293999 136299286 ECH