Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03108 ATGCAAAACAAAATGGAATACAAACTCAATTCTTCTCCATCAATTCCAATAATCCACGTCCCCACAAAGATCTCAAATTCTCCACCTCCTCCTTCTTCTTCTCCTCCCAATTCACAATCTCAATCTCCAACTTCCTGTGCTCCGCCGTCGCCGCCTCCACCTGTGGTGGTGAGCCCTTGCGCCGCCTGTAAGATCCTCCGTCGCCGCTGCGTTGAGAAGTGTGTTCTTGCTCCTTACTTCCCTCCAACTGATCCACTCAAGTTCACCATTGCCCATAGAGTCTTTGGAGCAAGTAACATTATCAAGTTCTTGCAGGAACTACCAGAAAGCCAAAGGGCAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAATTAGGGACCCAGTTTATGGTTGTGCAGGAGCAATATGCCAACTCCAAAAGCAAGTGAGTGAGCTTCAAGCACAATTGGCAAAAGCACAAGCTGAGCTTGTTAACATGCACTGCCAACAAACCAATTTGGTTGCACTCATTTGCATGGAAATGAGTACTAGTAATACTCATCAATCATCTTCACATCAGGAACAACACCACATGATGATGATTCAGCCTCAGAATAATAATAACAATAATAATCATGTTGATATGTCTTGCTTCATTGATGACAACAATCTTGCTTCTGCTTGGGAGCCTCTATGGACATAA 690 0.4449 MQNKMEYKLNSSPSIPIIHVPTKISNSPPPPSSSPPNSQSQSPTSCAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMHCQQTNLVALICMEMSTSNTHQSSSHQEQHHMMMIQPQNNNNNNNHVDMSCFIDDNNLASAWEPLWT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03108 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 44 226 - -
Aip09g03108 229 MobiDBLite consensus disorder prediction 23 37 - -
Aip09g03108 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 44 226 - -
Aip09g03108 229 MobiDBLite consensus disorder prediction 1 21 - -
Aip09g03108 229 MobiDBLite consensus disorder prediction 1 53 - -
Aip09g03108 229 Pfam Lateral organ boundaries (LOB) domain 59 156 IPR004883 -
Aip09g03108 229 Coils Coil 138 165 - -
Aip09g03108 229 ProSiteProfiles LOB domain profile. 58 159 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03108 Aip-Chr9 136234402 136236076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03108 55 229 AS2 family AT1G07900 63.128 1.38e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip09g03108 LOB 3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03108 - - gmx:100779519 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03108 09 136234402 136236076 Aip09g03108 09 136234402 136236076 ECH