Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03101 ATGCCTCTTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGTTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTTTTTTGGGAATCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATATTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGGTGTCATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTTGAATTAACTTTAAAAGATCTTACAGTGAGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATATTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTTAGGCAGAGGTGCAATGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATACGTTTAACTAGAAAATGTACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATAGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTAACTTGTTTATTGAGGTTCAAAGAGATGCGAGTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATCGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAACTTCCCAATTATGATGCTGATGACGAGTCTACTCCAAAAAAGGAGCCTGATTTACCCAAATCTGTTCCTTGTGGAAAAGGAGATATTGGTATTAAGAAGGAGTCATCAAAGACTCTTATCAAAAGTGAGAAAGTTGCTGATGGAAAAGATGAGAAAACACCTAGCAATGATACTGTTAGTGATGATCTTTCTACTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTCTCCATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATGATGTTGTGACCTCGAAGGGCAAGAGGAATTTGAATCCCCAATTTGAAAAGGCGGCTGCTGATGCAGATGGGCGTGGGTTCAAGATTGTCAAGGTTGTCTTGATGTTGGTGATCCTAACTATGAATGTTCAGTCTGTGGGGCGTGTTTCTGGTTATCAGAACGTGTTGAAAGAGACTCTACAGCAAACATTTGAGATAGATAGAGAATTGATAACTGAGTTGTTGCAAATTATCGATACTCATAATGTCATAGCACAGCCATTTCAAAGAGTCAGAGAATTCTATCAGTGTCATCCATTCGAGATCTTCTCTTTGAAGTTGTATTCGCATAGGAAGGTTGATCGAAGAACTTACAATGCTCCCTCTTGTGATGAAGTTGCTGCTTTGATTGTTGGAGATTTTGATTCGTTGGATCATGGTTGTGACATTATTTTTCGATCTACTGCTGGTCAGTTACAGCGTATCTATGAAACTCATGCTCTGTATTGGCCCTTACAGTATCCGTTGTTGTTTCCATATGGCGAGGATGGTTACCAGTTGAATATTCCTTATCGAGGTCAAGTTGATGGATATGTCCCTGGAAGGAGAACAAGGGTTTCTCTCAGGGAATTCATATGTTTTTGTCTGCAGATTAGGGAGCAAGAAGATGGAATTATTCACAAGTGTAGGTGA 2256 0.3883 MPLPFDMISKMHPPREAWRLKVRVLRLWVVPFFGNHEVPNSMEMILLDEHCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDIIPKTCFNMFPFSELLNMTQDYDFLVGVIGLLTSVGEEKEYAKEGKIVKMIVLELTLKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQILFNPDLPEVVEFRQRCNGTQPLFIANEGKVVSLEDDFIRLTRKCTIEELQDNNQEGSFIIFGTIQGIVEDRGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHSGEGIFLLFDREASYLLKKSCANLFIEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYRTFRVRRICDDPTIIAMFELPNYDADDESTPKKEPDLPKSVPCGKGDIGIKKESSKTLIKSEKVADGKDEKTPSNDTVSDDLSTELDILLSSPEKETQEVLSHVLHAPSQYGEKLIHENDVVTSKGKRNLNPQFEKAAADADGRGFKIVKVVLMLVILTMNVQSVGRVSGYQNVLKETLQQTFEIDRELITELLQIIDTHNVIAQPFQRVREFYQCHPFEIFSLKLYSHRKVDRRTYNAPSCDEVAALIVGDFDSLDHGCDIIFRSTAGQLQRIYETHALYWPLQYPLLFPYGEDGYQLNIPYRGQVDGYVPGRRTRVSLREFICFCLQIREQEDGIIHKCR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03101 751 Pfam Replication factor-A C terminal domain 286 367 IPR013955 -
Aip09g03101 751 CDD RPA1_DBD_A_like 19 107 - -
Aip09g03101 751 SUPERFAMILY Nucleic acid-binding proteins 269 415 IPR012340 -
Aip09g03101 751 MobiDBLite consensus disorder prediction 470 489 - -
Aip09g03101 751 PANTHER REPLICATION FACTOR A 1, RFA1 22 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g03101 751 Pfam Domain of unknown function DUF223 43 133 IPR003871 -
Aip09g03101 751 Gene3D - 114 247 IPR012340 -
Aip09g03101 751 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 367 - -
Aip09g03101 751 SUPERFAMILY Nucleic acid-binding proteins 120 243 IPR012340 -
Aip09g03101 751 CDD RPA1_DBD_C 272 415 IPR013955 -
Aip09g03101 751 Gene3D - 4 112 IPR012340 -
Aip09g03101 751 MobiDBLite consensus disorder prediction 434 449 - -
Aip09g03101 751 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Aip09g03101 751 MobiDBLite consensus disorder prediction 470 485 - -
Aip09g03101 751 MobiDBLite consensus disorder prediction 434 456 - -
Aip09g03101 751 CDD RPA1_DBD_B_like 141 242 - -
Aip09g03101 751 Gene3D - 263 420 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03101 Aip-Chr9 136089603 136096776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03101 11 359 Core DNA Replication Machinery Family AT5G08020 23.989 2.38e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03101 - - adu:107471135 895.575