Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03070 ATGGACAGAAGCAGAACAAGAACAACAACATCAGCAATACAAACATGCTTAGATTCTCAACTATGGCACGCCTGCGCAGGCCCCATGGTTCAAATGCCACCTCTCAACACCAAAGTCTTGTACTTCCCACAAGGCCACGCTGAACACGAACAAGCTCATGCCCATGGTCGAAAACCCCATTTTGCCCCTACCATCAAAACCCCCATTCCGCCCTTCTTCCCTTGCACACTCACCGCCATCAAATACATGGCAGAACCTGAAACCGACGAGGTCTACGTCAAGATCACCCTCACCCCTCTCCCTCAACAACACCACCTCTCAGACCCAGAAGAACACGATCATCATTGTAGTAGTAATCATAATAGTTTCTTGGACAACAATAATAATGGTGAAAAGCCTGCTTCTTTTGCAAAGACTCTAACACAATCCGATGCCAACAATGGCGGCGGTTTCTCTGTGCCTCGTTACTGCGCCGAAACCATTTTCCCAAGGCTTGATTACTCCGCAGAGCCTCCGGTTCAGACCATAATCGCAAAAGACGTGCATGGGCAGTGTTGGAAGTTCAGACACATTTATAGAGGCACGCCAAGGAGGCACCTTTTGACTACTGGTTGGAGCAATTTCGTTAACCACAAGAAGCTTGTTGCCGGTGACTCCATTGTTTTCCTCCGAGCCCAAAATGGTGACCTTTGTGTTGGGATTAGGAGGGCCAAGAAGGGTGGTATTGGTGCTGGAACCGCCACAAATACTAATATTAGTACGACTAATAATGTTGGTTATGGTGGTGGTGAATGTAATTGTGTTGGTGAGGCTGTGAATTGTGCTGTGAATGGAAGGGCATTTGAGGTGGTGTATTATCCAAGAGGGAGCTCACCGGAGTTTTGTGTGAAGGCTTCTTCAGTGAGAGCTTCAATGCAGATTCAATGGTGTTCTGGTATGAGATTCAAGATGCCCTTTGAGACTGAGGACTCTTCCAGAATCAGTTGGTTCATGGGGACTATTTCTTCTGTCCAGCTTTCAGATCCTCTTCATTGGCCTCATTCTCCTTGGCGTCTTCTTCAGGTGGTATGGGATGAACCAGATCTACTCCAAAATGTGAAGTGTGTGAATCCTTGGTTAGTTGAACTAGTCTCAAATGTGCCAAACTTTCATCTCTCTCCATTCTCACCACCAAGGAAGAAACAAAGGTTCCTACAAGACCAACCAGATTTTCAACTCATCAACCAATTTCCACCTGCATCATCATTCTCCACCATTCAAGATCATCAAGGCATACAGGGAGCCAGGCATGCCCATCAATTCGGGCTCGCTCCGCAAGATTTCCACATTCTTGATGGATTTCCAAGGCTTGATCATGCAGCACAACACCCTCATAGGCCTAGTTTTGGAATCTACAACAAGAACAACTCCGCCGCCACCAAGAACAATAACAATCTTGAGATATCTTGCTTGTTGAGTGTGGGAAATCCTGGCCAGAGTTTCAATAAGGAGGAGTCTTGTTCCAATGAAACAAAAGCACCACACATTTTGTTGTTTGGGAAGCTCATTCACACTGATCAGCAGAACCATTCATCAAACAGTTCAAATAGTGTTTATGAAGGAACTAATTCATCACTCAAGACATCAATTGAAAACTCTTCTGATGATGGAGGGTCTCCCTGGTTCAAAAATCAGCACAAGAATAATGATCTTGTTGGAACTGAAAACATTAACATATTGTGTATGGCCTTATAA 1734 0.4516 MDRSRTRTTTSAIQTCLDSQLWHACAGPMVQMPPLNTKVLYFPQGHAEHEQAHAHGRKPHFAPTIKTPIPPFFPCTLTAIKYMAEPETDEVYVKITLTPLPQQHHLSDPEEHDHHCSSNHNSFLDNNNNGEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAQNGDLCVGIRRAKKGGIGAGTATNTNISTTNNVGYGGGECNCVGEAVNCAVNGRAFEVVYYPRGSSPEFCVKASSVRASMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQLSDPLHWPHSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNVPNFHLSPFSPPRKKQRFLQDQPDFQLINQFPPASSFSTIQDHQGIQGARHAHQFGLAPQDFHILDGFPRLDHAAQHPHRPSFGIYNKNNSAATKNNNNLEISCLLSVGNPGQSFNKEESCSNETKAPHILLFGKLIHTDQQNHSSNSSNSVYEGTNSSLKTSIENSSDDGGSPWFKNQHKNNDLVGTENINILCMAL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03070 577 MobiDBLite consensus disorder prediction 105 119 - -
Aip09g03070 577 Gene3D - 308 382 - -
Aip09g03070 577 SMART B3_2 136 238 IPR003340 GO:0003677
Aip09g03070 577 MobiDBLite consensus disorder prediction 120 134 - -
Aip09g03070 577 MobiDBLite consensus disorder prediction 520 555 - -
Aip09g03070 577 Gene3D - 134 238 IPR015300 -
Aip09g03070 577 SUPERFAMILY DNA-binding pseudobarrel domain 132 236 IPR015300 -
Aip09g03070 577 CDD B3_DNA 135 236 IPR003340 GO:0003677
Aip09g03070 577 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 560 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip09g03070 577 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Aip09g03070 577 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Aip09g03070 577 MobiDBLite consensus disorder prediction 104 134 - -
Aip09g03070 577 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip09g03070 577 PANTHER AUXIN RESPONSE FACTOR 16 11 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03070 Aip-Chr9 135376995 135379027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03070 17 564 B3 DNA Binding Superfamily AT4G30080 51.505 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip09g03070 B3 3.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03070 - - gmx:100803053 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03352 02 110221954 110224324 Aip09g03070 09 135376995 135379027 ECH
Aip09g03070 09 135376995 135379027 Aip09g03070 09 135376995 135379027 ECH