Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03066 ATGTGCAAAGAATTTCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGAAATTGAGTGGTGAAGGTGGTTGTGCCCCGAAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGTAGTGGTAGAGTTCAGCAGCAATATTCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAAATGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGACGCCGCAATACGCTGTCACCGCCGCTGCTACACTCGGGTCCACCACTTCATTATTTTCTGTCGCCTCTCTGTTCCTCTTCTTTACCAGCAACTTTGATTTCTGTCCTTCTCCCTCCAACTATGCCTCTGCCTCTGTGACCTACCCCTTTAAGAGTATTGAATGTTGTTTTGATTTCAAAAGAATTTGA 660 0.4242 MCKEFHKKLDLKDEDERVAENEKKDSDFVAGSGEYGGEKLSGEGGCAPKTGEAQGSDDNDGWDDDEGYGWNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYSLRPDAEDCAFYLKNGTCKFGFNCKFNHPLGRRKNQTPQYAVTAAATLGSTTSLFSVASLFLFFTSNFDFCPSPSNYASASVTYPFKSIECCFDFKRI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03066 219 MobiDBLite consensus disorder prediction 1 120 - -
Aip09g03066 219 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Aip09g03066 219 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 150 IPR000571 GO:0046872
Aip09g03066 219 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 3 158 - -
Aip09g03066 219 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Aip09g03066 219 MobiDBLite consensus disorder prediction 68 88 - -
Aip09g03066 219 PANTHER PROTEIN PHOSPHATASE RELATED 3 158 - -
Aip09g03066 219 MobiDBLite consensus disorder prediction 1 29 - -
Aip09g03066 219 Gene3D - 97 162 - -
Aip09g03066 219 SUPERFAMILY CCCH zinc finger 126 153 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03066 Aip-Chr9 135272162 135273710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03066 121 153 C2H2 Transcription Factor Family AT1G29570 54.545 5.85e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip09g03066 zf-CCCH 9.1e-08 CL0537