Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03062 ATGGGAAGCAAATGGAAGAAAGCGAAGGTGGCTCTGGGGCTCAACCTCTGCATGTTTGTTCCGAAGACATTAGACGACAGTGACTCATCTCCGTCGCACACGGAGGTTTCCGAGAGGCTTTCGAACGCAGCGCTGCTTCCGGCGGCGGAGAACATGGAGATGGATTCTTCTACGCCAACAGCGCCGGTTCCGTCGTTGAAGCTGTCGAGAAGTGTCAGCAGCAGCAAGTCTTCAAAGCAAACTTGCGCAATATGCTTAACCAAAATGAAACAAGGATCTGGTCAGGCTATATTCACTGCCGAATGTTCACATTCCTTCCATTTCCACTGTATTGCTTCGAATGTGAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAAGAAATACCTTTCTCGGGTCCGAGTTTGGATCCTATACAGGGAAGAACGTCACCTAGTCCAATAAATTGGCACCAGAATGATGCTTTGATGGCCTTGGTCCATCCATTACCTCTACCTCTACCTCATCCTCCTCGACGAGACCTGAGTAGGCGGCATATTGTTCCCCTTTACCAAGAGCCAGGCATATTTAATGATGACGAATCATTGAATCATGAAACCGTAGTTTCTGAGAGAAGTCCTTGCAATAAGAGTACTGAAGATAACGATTCTGTTAGAGAATTGGAGATTAAAACATATCCGGAAGTTTCTGCTGCTCCTGGGTCCAATAGTTATTCTAATTTCACAGTTCTGGTTCATCTCAAAGCTGCTACTGCTTCTACAACAGCAGCTGAAGCCGGGAGTCAAAATGTCAGTAGAAACCAGCCTAGCTTGACACAGATTTCTCAGACTCCTCGTGCCCCTGTTGACCTGGTCACGGTGCTTGACATCAGTGGTAGCATGGCTGGAACCAAGCTGGCACTACTGAAAAGAGCTATGGGATTTGTTATACAGAACCTTGGCTCTAATGACCGCCTTTCCGTTATTGCTTTCTCTTCCACAGCCCGCCGTCTCTTTCCGCTGTCAAGGATGACGGATTCCGGGCGGCAACAGGCTTTGCTAGCTGTTAATTCTTTGGTTGCAAATGGGGGCACTAATATTGCCGAAGGGTTAAGAAAAGGTGCTAAGATAATGGAAGACCGAAAAGAGAAGAATCCAGTTGCCAGTATTATACTACTATCAGATGGACAAGATAATTACACCGTCAATGGCCCTGGAACTAACCAACCTCAACCAAATTACCAGTTGCTTTTGCCTACTTCTCTCGGTGGTCGTGATAATTTGGGATTTCAGATTCCCGTGCATGCTTTTGGATTTGGCACAGACCATGATGCTTTATCAATGCACTCAATTTCGGAGATGTCTGGTGGTACATTTTCTTTCATCGAGACTGAAGCTGTGTTACAGGACGCCTTTGCTCAATGCATTGGAGGACTTTTGAGTGTGGTTGTTCAGGAGCTGCAGGTGGAAATTGAGTGTATACATCCAAATCTTAGTCTTTCTTCCCTAAAGGCAGGGAGCTACCCAAGCCGTGTCGGGGCCGATGGACGCAAAGGTTTTATTGATGTTGGAGACCTATATGCTGATGAAGAGAGGGACTTTCTAGTTTCAGTTGATGTCCCAGCTACATCCAGCAATGAAACATCATTGCTTAAGGTCAAATGTGTTTACAAGGATCCTTTAACTCAGGAAACAATGACACTGGAAAGCGAAGAAGTTAAAATCGAAAGGCCTGAGCAAGCCGGGCAGGTTGTAATGTCACTTGAGGTAGATAGACAGCGAAACAGGCTCCAAGCAGCTGAGGCAATGGCCCAGGCACGGCTTGCAGCCGAACAGGGAGACCTTTCCGGCGCGGGGCTAATCCTGGAAAACTGTCGAAAGATGCTTGCGGAGACCATTTCTGCTAAGTCACATGACCGCCTCTGCGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGAGGATGGCGAGTAGGCATGTGTACGAAGCATCTGGGAGAGCATACATCCTTTCCGGATTGAGTTCACACTCATGGCAACGAGCAACAGCAAGAGGTGATTCTACTGATAGTTCAAGTCTTGTTCGGGCATACCAGACCCCATCAATGACCCAGATGCTTACTCGATCTCAGGCCATGTTGCTAGGTAGTCCATCAGGCCAGAGGCTTCTTCAGCCTCTGCTGTCGTTCCGATCACAACCAAGCCCAAGGTAA 2202 0.4741 MGSKWKKAKVALGLNLCMFVPKTLDDSDSSPSHTEVSERLSNAALLPAAENMEMDSSTPTAPVPSLKLSRSVSSSKSSKQTCAICLTKMKQGSGQAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPFSGPSLDPIQGRTSPSPINWHQNDALMALVHPLPLPLPHPPRRDLSRRHIVPLYQEPGIFNDDESLNHETVVSERSPCNKSTEDNDSVRELEIKTYPEVSAAPGSNSYSNFTVLVHLKAATASTTAAEAGSQNVSRNQPSLTQISQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLSRMTDSGRQQALLAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGPGTNQPQPNYQLLLPTSLGGRDNLGFQIPVHAFGFGTDHDALSMHSISEMSGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVEIECIHPNLSLSSLKAGSYPSRVGADGRKGFIDVGDLYADEERDFLVSVDVPATSSNETSLLKVKCVYKDPLTQETMTLESEEVKIERPEQAGQVVMSLEVDRQRNRLQAAEAMAQARLAAEQGDLSGAGLILENCRKMLAETISAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVRAYQTPSMTQMLTRSQAMLLGSPSGQRLLQPLLSFRSQPSPR 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03062 733 CDD RING-H2 82 126 - -
Aip09g03062 733 ProSiteProfiles VWFA domain profile. 286 472 IPR002035 -
Aip09g03062 733 SUPERFAMILY vWA-like 281 472 IPR036465 -
Aip09g03062 733 Pfam VWA / Hh protein intein-like 635 707 IPR032838 -
Aip09g03062 733 Gene3D von Willebrand factor, type A domain 286 473 IPR036465 -
Aip09g03062 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 131 IPR013083 -
Aip09g03062 733 CDD vWA_C3HC4_type 285 459 - -
Aip09g03062 733 MobiDBLite consensus disorder prediction 259 278 - -
Aip09g03062 733 Pfam RING-like zinc finger 82 111 IPR001841 -
Aip09g03062 733 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 711 - -
Aip09g03062 733 SMART ring_2 82 125 IPR001841 -
Aip09g03062 733 SUPERFAMILY RING/U-box 78 132 - -
Aip09g03062 733 Pfam von Willebrand factor type A domain 286 469 IPR002035 -
Aip09g03062 733 Coils Coil 631 651 - -
Aip09g03062 733 SMART VWA_4 284 471 IPR002035 -
Aip09g03062 733 PANTHER OS10G0464500 PROTEIN 3 711 - -
Aip09g03062 733 ProSiteProfiles Zinc finger RING-type profile. 82 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03062 Aip-Chr9 135253817 135258894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03062 68 126 C3H Transcription Factor Family AT1G57730 40.678 2.95e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03062 - - adu:107467927 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03062 09 135253817 135258894 Aip09g03062 09 135253817 135258894 ECH