Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03060 ATGGAGAATTCGAGCAGCAGAAACGACTCCTTGAGCCTCTGTAATGACAGTCATGACCCACTGAACTGGGTCATGGCTGCAGAGGCCCTAAAGGGTAGTCATCTCGACGAGGTAAAGCGGATGATAGAAGAGTACAGGAAGAAGGAGGTGTTCTTGGGTGGCAAGGGACTCACCATATCCCAGGTGGCCGCGGTGGCCATGAACGACGATGGTGGCGTGGCGGTGGCTCTGGCGGAGGAGGCACGTGCCGAGGTGAAGGCAAGCAGCGATTGGGTGAGGGAGAGCATGGACAAAGGCATGGATAGCTATGGTGTCACCACAGGGTTTGGTGCAACCTCACACAGGAGAACCAAGCAAGGTGGTGCCCTTCAAAATGAACTCATAAGATTCTTGAATGCCGGAATATTCGGCAACAGCACAGAATCTTGTCACACATTGTCCCACACAGCAACAAGAGCAGCCATGTTGGTTAGGATCAACACATTGCTCCAAGGCTATTCCGGAATCAGATTCGAGATCTTGGAAGCCATAACAAAGTTCCTCAACCACAACATTACACCATGCCTCCCTCTCCGCGGCACCATCACCGCCTCCGGCGACCTGGTCCCGTTGTCCTACGTAGCGGGCCTTCTAATCGGAAGGCCCAACTCCAAGTCAGTTGGGCCTAATGGACAACTCCTCAATGCCAAAGAGGCCTTCGAGCTGGCCGGAATTGACAGCGGTTTCTTTGACTTGCAGCCCAAGGAAGGTCTGGCTCTGGTCAACGGAACTGCTGTTGGTTCTGGCCTAGCCTCAATGGTACTCTTCGAGGCCAACATACTGGCCGTCCTCTCGGAGGTTTTGTCGGCAATTTTCGCGGAAGTTATGCAGGGGAAGCCGGAGTTTACTGATCATCTAACTCACAAATTGAAGCACCACCCTGGTCAGATTGAAGCTGCAGCAATAATGGAACATATCTTAGATGGAAGCTCATATGTTAAAGCTGCAGAGAAGGTTCATGAGATTGATCCTCTTCAGAAGCCGAAACAAGATAGATACGCTCTTCGAACTTCGCCTCAATGGTTAGGGCCACAAATTGAGGTGATTCGCCATAGCACGAAGATGATCGAGAGGGAGATCAACTCTGTAAACGACAATCCATTGATCGATGTGTCGAGGAATAAGGCACTGCACGGGGGGAACTTTCAAGGGACTCCGATTGGTGTGTCGATGGATAACACCCGGCTGGCCATAGCATCCATTGGCAAACTCATGTTTGCTCAATTCTCCGAGTTAGTTAATGACTTTTACAACAACGGTCTGCCTTCGAATTTAACCGCTAGCCGGAATCCGAGCTTGGATTACGGCTTTAAAGGCGCGGAAATCGCCATGGCTTCATACTGCTCTGAGCTGCAATATCTTGCAAACCCTGTGACAAACCATGTTCAGAGTGCTGAGCAACATAACCAAGATGTGAACTCCTTGGGATTGATCTCATCAAGAAAAACAGCTGAGGCAGTTGATATATTGAAGCTGATGTCATCAACTTACTTGGTAGCGTTGTGCCAAGCCATTGATCTTAGGCATTTAGAGGAGAATCTGAAGAACACGGTGAAGAACACAGTGAGCCAAGTGGCCAAAAGGGTGCTCACAATGGGGGTAAACGGCGAGTTACATCCGTCCAGGTTCTGCGAAAAGGACTTGCTCAAGGTCGTGGATCGCGAGTATGTGTTCGCCTACGCCGATGATCCGTGCAGCGCAAGCTACCCTCTGATGCAGAAGCTGAGACAAGTCTTGGTTGATCATGCTTTACAGAATGGTGAGAAAGAGTGCAATGCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGCAAGAGCTGAAGACCCTTTTGCCCAAAGAGATTGAGAGTGCAAGAATTGGAGTTGAGAATGGAAATGCTGCTGTTCCTAACAGAATCAAGGAGTGTAGATCATATCCAATTTACAGGTTTGTGAGAGAAACTTTGGGAACAGATTTGCTGACAGGTGAGAAAGTTAGGTCCCCTGGTGAGGAATGTGATAAGGTATTCACTGCTATGTGTCAAGGAAAATTGATTGATCCAATGTTGGATTGTCTAAAGGAGTGGAATGGTTCTCCTCTTCCAATATGCTAG 2136 0.4892 MENSSSRNDSLSLCNDSHDPLNWVMAAEALKGSHLDEVKRMIEEYRKKEVFLGGKGLTISQVAAVAMNDDGGVAVALAEEARAEVKASSDWVRESMDKGMDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNSTESCHTLSHTATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSVGPNGQLLNAKEAFELAGIDSGFFDLQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAEKVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCSASYPLMQKLRQVLVDHALQNGEKECNASTSIFQKIGAFEQELKTLLPKEIESARIGVENGNAAVPNRIKECRSYPIYRFVRETLGTDLLTGEKVRSPGEECDKVFTAMCQGKLIDPMLDCLKEWNGSPLPIC 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03060 711 Gene3D - 12 257 IPR024083 -
Aip09g03060 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 19 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Aip09g03060 711 CDD PAL-HAL 55 521 IPR001106 -
Aip09g03060 711 SUPERFAMILY L-aspartase-like 19 711 IPR008948 GO:0003824
Aip09g03060 711 Pfam Aromatic amino acid lyase 57 534 IPR001106 -
Aip09g03060 711 Gene3D - 524 645 IPR023144 -
Aip09g03060 711 Gene3D Fumarase/aspartase (Central domain) 258 705 - -
Aip09g03060 711 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 15 711 - -
Aip09g03060 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Aip09g03060 711 PANTHER HISTIDINE AMMONIA-LYASE 15 711 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03060 Aip-Chr9 135106339 135112834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03060 19 711 Monolignol Biosynthesis Gene Families AT3G53260 83.550 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03060 K10775 - gmx:100818777 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01715 06 36666646 36671918 Aip09g03060 09 135106339 135112834 ECH
Aip02g03345 02 110114450 110118495 Aip09g03060 09 135106339 135112834 ECH
Aip09g03060 09 135106339 135112834 Aip09g03060 09 135106339 135112834 ECH