Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03058 ATGGGTAATGTTGAAATCCCCAATTGGCTCAAAGGGTTGCCACTGGCACCTGAATTTCGACCTACTGATACCGAATTCGCCGACCCGATTGCTTATATTTCAAAGATTGAGAAGGAAGCTAGCAACTATGGGATATGTAAGATTATACCACCATTGCCCAAGCCTTCAAAAAAATACGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGGCCTCTGAATTGGGTCCAGAGAGCAATTCTTTAGGTTGTTGTAATTCTTCGAGAACGGATTCTAGGGATGTTAGTAGTAGTGATAGGCTGTTGAGGGCTGTCTTTACTACAAGGCAGCAAGAACTAGGGCAGAATGTGAAGAAAATCAGCAAAGGGAATGTTCAGAATCCACTGCCAGGTGGTCAAAAACAAGTTTGGCAGAGTGGGGAAGTCTATACACTTGATCAGTTTGAGTCGAAATCGAAGTCCTTTGCTAAAAGTGTGCTGGCTACGGTGAAGGAAGTTTCTCCACTGGTTATAGAGGCTATGTTTTGGAAGGCAACATCAGAGAAGCCTATATATATTGAATATGCCAATGATGTGCCTGGGTCTGCTTTTGGGGAATCACAGGGTCAATTTCTTTATAGTCATAGAAGACGAAGAAAAAGGACTTATTATAAGAGTAGGCCACATAGCACTGATTCTAAACAAACTGAAATGGATGGCATAGGAGATACCCAAATTGATGAGAATAAGGGTGCTTCTGCCAAAACTCATGCAGAACAATGTGTACAGTCCCAAACAGCTAGTACTGTGACACTTGCATCAAACGAATTTTCACAATCTTCTAGGGAAAAGGGTTCAGATGCTGCTGATGATGATATGGAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCATGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCGCTAACACGTTTCATGCCCGATGATATTCCTGGTGTTACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTGGAGGATCATGAGCTTCACAGCTTGAATTTCCTTCACACTGGCTCTGCAAAGACTTGGTATGCTGTTCCTGGAGAATATGCCTTTGCTTTTGAGGAGGTCATTCGCTCTAAGGCATATGGTAGTAGTGTTGATCATTTAGCTGCTTTGAAACTTTTAGGTGAGAAAACAACTCTTATATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAATACAGAATCCTGGTGAATTTGTTGTGACATTTCCAAGGGCTTACCATGTCGGATTCAGCCATGGTTTTAACTGTGGGGAGGCTGCTAACTTTGGAACTCCACAGTGGCTTACAGTAGCTAAGGAAGCTGCTGTGCGTAGAGCTGCTATGAATTATCTTCCAATGCTCTCACATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCTAGAGTACCAAGAACATTATTACCTGGTGTGCGTAGTTCTCGTCTAAGAGACCGTCAGAAGGAAGAAAGAGACAAAGATTGTTCATTACCTGAAGTTTCTGCTGCTGAAACGGCCATGGTGGACATGCCAAATACTAGTTCGGGAGATAAGATTGGTCATAGTCTGATTGATGAGATGAGTTTGTATATGGAGAATCTGAATGGTCTATATCTTGATTGTGATGATCTTCCATCTCACTTCCAAACTGATTCAGGGGCATTGGCTTGTGTGGGCTGTGGAATCCTTGGTTTTCCATTTATGACTGTGGTACAACCATCTGAGAAATGGATGGAAACTCTTCCTGGTCAAGATTGCACTCTCAACTCTACTGCTCGTAGCTCAGTCTCTGGTAATGACTCTGTTTCTAAACTTCCTGCTGCAAAGGAGTTACCAGATCAATCATTTGATTGTAGTAATTGTTGGAACATGGCTAATAAATTTTTGAGGCCTCGGATTTTCTGCCTGGAACATGCAGTTCAGATAGTGGAGATGTTGCAGTGCAAAGGCGGAGCCAATGTGCTTATAATATGCCATTCAGACTATGAGAAGATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGACACACATTGCATTTGATTATAACAATGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTCTCATTGACCTGGCAATTGATGGTGAGGAATATGATGAATGCGAAGACTGGACATCTAACTTGGGAATTAATCTGCACCATTGTGTTAATGCAAGAAATACGTCTCCATCTAAACAAGCTATTTGGACCCTGGCATTGGGCATGCTGTTCTCTGATAAAGGTCCTGGTTCACAATTTATAGCTATAAATTGGCAGTCTCGAAGAGCTCGCTCCAAAAGATTACATCATCTAGCTCCAATGAAACCTAAACCCAGTATTGCCATTCAGAAAAGGGAAGATGATGAGTTGGAGGGAAGAATAGATGATTCTATTGCCAAAAAGAAGTTAATTCAATATTCAAGAAGGAAGTTCAAGTCCAACAAAAATTCTTATTCTGGATCAAGCATTGTCCATGAATTGCAAGAGAAGTCCAAGATTGTGTCGGCTGATTCGAGTGGGGATCATTATAAATGTGGTTCTAAAGGGGAGCTTGATGCTGATAATTTCAAAAGTGATTGTGCTTTGCCAAATGCATCTGCTTCCATTGCAGTGTCTCCAGTGGATCATGAAATTCAGGGTACTGAATTTCCCAATAGCATTAGCTTGAATGCTGATACTTCACAAACTTCTAATTCCTCTCCAGGTCATCGTTTCGTGAATGAAAATGTTGAAACTGAGATTGAGAATCACACTCTGCAGGATTTAGCAATAGATGGAGAAAAAGATGAACAATCTAAGATTCATCATGATACTGGTGTTTTGGAAACGAGTGGCAAGGAGGAGCTTGGGTGTCAGGACAATAAATATTCTAGATCACTTGTGAATTCGACAGAGAGAAATGTTGACATTGATTGTAAATGTGATAGCTTGGATTTGGATGAAGGATTGCATCGAGAGAATCCATCTGCCTGCAAAAGCAACAATGAAGAAGCTGCTTCATCTAGTGTCTCATTGGCAAATCAACCTGTACTTGCCTCTATAGACGACGCCTTAACTGAATTGGCTTCGGAGTCTGCAAAGCAGTGCAAGGTCCAAGAGAATAATACAATTTACAAGGAACCTGTTTCTAGTAATGTTGCAAGAGGCAATACTAGAAGTGAAGCCATCTTGGAGTTAGGATGTTCTGAAGTTGCAGTAGAAACTTGTTCTCAAGAAGAAAATGAATTGAAAATCCAGCCAAATAATAGAATTAATGAGGAAGATAACTCAAGTCCCAAGACACCATTAAAGGAAGATATTAATGGAAGTGAAGATAAATTGTCACAAGATATGTTGACAGAGCAGGAAAGCTGTAAGTTGAGTAATCCGGTTCCCAGATCAAATGCTCGGAAGAAAAGAAAGACGGAACTGGACCAGATAACAGAGAATCAACTCAGCTGCAACAACTTTATTCGAAGTCCGTGTGAAGGTCTGAGGCCAAGAGCTACGAAGATTGCCCCTGAGAAAAGTGAGGGAGATGCCGACCAAGATGACAAGGAGAATCCGAAGGCTAGAAGGGATCGGAAACCTTCTGAAGTTCCAGCTGCACACAAGAACAAAAAAGACGATGTTGAAAAGCCCCACAGGTGTGACCTTGATGGTTGCAGTATGAGTTTCATGACAAAGGGTGAGTTACAGTTGCACAGGCGTAACCTTTGCCCTCACAAAGGGTGTGGCAAGAAGTTCAGCTCCCACAAATACGCTCTCCTTCATCAGCGTGTTCATGATGACAAGAGGCCCCTCAAGTGCCCATGGAAAGGTTGTACCATGTCATTCAAGTGGGCATGGGCAAGGACGGAGCACATACGGGTGCACACCGGGGAGAAGCCCTATAAATGCAAGGTCGAGGGGTGCGGCCTTTCTTTCAGGTTTGTGTCGGATTTTAGCCGGCACCGGAGGAAAACAGGTCACTACGTGAAATCTGATTGA 4023 0.4238 MGNVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASNYGICKIIPPLPKPSKKYVFSNLNKSLLKASELGPESNSLGCCNSSRTDSRDVSSSDRLLRAVFTTRQQELGQNVKKISKGNVQNPLPGGQKQVWQSGEVYTLDQFESKSKSFAKSVLATVKEVSPLVIEAMFWKATSEKPIYIEYANDVPGSAFGESQGQFLYSHRRRRKRTYYKSRPHSTDSKQTEMDGIGDTQIDENKGASAKTHAEQCVQSQTASTVTLASNEFSQSSREKGSDAADDDMEGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSAKTWYAVPGEYAFAFEEVIRSKAYGSSVDHLAALKLLGEKTTLISPEVVVASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEERDKDCSLPEVSAAETAMVDMPNTSSGDKIGHSLIDEMSLYMENLNGLYLDCDDLPSHFQTDSGALACVGCGILGFPFMTVVQPSEKWMETLPGQDCTLNSTARSSVSGNDSVSKLPAAKELPDQSFDCSNCWNMANKFLRPRIFCLEHAVQIVEMLQCKGGANVLIICHSDYEKIKAHARAVAEETHIAFDYNNVPLDTASPENLTLIDLAIDGEEYDECEDWTSNLGINLHHCVNARNTSPSKQAIWTLALGMLFSDKGPGSQFIAINWQSRRARSKRLHHLAPMKPKPSIAIQKREDDELEGRIDDSIAKKKLIQYSRRKFKSNKNSYSGSSIVHELQEKSKIVSADSSGDHYKCGSKGELDADNFKSDCALPNASASIAVSPVDHEIQGTEFPNSISLNADTSQTSNSSPGHRFVNENVETEIENHTLQDLAIDGEKDEQSKIHHDTGVLETSGKEELGCQDNKYSRSLVNSTERNVDIDCKCDSLDLDEGLHRENPSACKSNNEEAASSSVSLANQPVLASIDDALTELASESAKQCKVQENNTIYKEPVSSNVARGNTRSEAILELGCSEVAVETCSQEENELKIQPNNRINEEDNSSPKTPLKEDINGSEDKLSQDMLTEQESCKLSNPVPRSNARKKRKTELDQITENQLSCNNFIRSPCEGLRPRATKIAPEKSEGDADQDDKENPKARRDRKPSEVPAAHKNKKDDVEKPHRCDLDGCSMSFMTKGELQLHRRNLCPHKGCGKKFSSHKYALLHQRVHDDKRPLKCPWKGCTMSFKWAWARTEHIRVHTGEKPYKCKVEGCGLSFRFVSDFSRHRRKTGHYVKSD 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03058 1340 Gene3D Classic Zinc Finger 1300 1340 - -
Aip09g03058 1340 Gene3D Classic Zinc Finger 1199 1249 - -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 1108 1130 - -
Aip09g03058 1340 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Aip09g03058 1340 SUPERFAMILY beta-beta-alpha zinc fingers 1289 1331 IPR036236 -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 1095 1156 - -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 218 246 - -
Aip09g03058 1340 ProSiteProfiles Zinc finger C2H2 type domain profile. 1279 1308 IPR013087 -
Aip09g03058 1340 ProSitePatterns Zinc finger C2H2 type domain signature. 1251 1273 IPR013087 -
Aip09g03058 1340 ProSiteProfiles Zinc finger C2H2 type domain profile. 1249 1278 IPR013087 -
Aip09g03058 1340 SMART c2h2final6 1279 1303 IPR013087 -
Aip09g03058 1340 SMART c2h2final6 1249 1273 IPR013087 -
Aip09g03058 1340 SMART c2h2final6 1226 1248 IPR013087 -
Aip09g03058 1340 SMART c2h2final6 1309 1335 IPR013087 -
Aip09g03058 1340 Pfam JmjC domain, hydroxylase 325 444 IPR003347 -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 787 806 - -
Aip09g03058 1340 ProSiteProfiles Zinc finger C2H2 type domain profile. 1309 1340 IPR013087 -
Aip09g03058 1340 ProSitePatterns Zinc finger C2H2 type domain signature. 1311 1335 IPR013087 -
Aip09g03058 1340 Gene3D Cupin 9 465 - -
Aip09g03058 1340 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1330 - -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 1180 1224 - -
Aip09g03058 1340 SUPERFAMILY Clavaminate synthase-like 293 458 - -
Aip09g03058 1340 ProSiteProfiles JmjC domain profile. 292 461 IPR003347 -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 210 290 - -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 1176 1224 - -
Aip09g03058 1340 SUPERFAMILY beta-beta-alpha zinc fingers 1250 1282 IPR036236 -
Aip09g03058 1340 Pfam jmjN domain 17 50 IPR003349 -
Aip09g03058 1340 Gene3D Classic Zinc Finger 1250 1299 - -
Aip09g03058 1340 SMART JmjN_1 15 55 IPR003349 -
Aip09g03058 1340 ProSitePatterns Zinc finger C2H2 type domain signature. 1281 1303 IPR013087 -
Aip09g03058 1340 MobiDBLite consensus disorder prediction 248 274 - -
Aip09g03058 1340 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1330 - -
Aip09g03058 1340 SMART cupin_9 292 461 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03058 Aip-Chr9 135029992 135038095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03058 1 828 C2H2 Transcription Factor Family AT5G04240 48.045 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g03058 JmjC 4.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03058 - - adu:107467970 2600.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03058 09 135029992 135038095 Aip09g03058 09 135029992 135038095 ECH