Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03040 atggacaccaacaaattgagcacagacgacgatggagaagcccttcgcagcggcgtcgccaacagtttcgaacaagcactcgacgtcgaggagaagaggatcgagaagcgagcagaccttccacgagcgaagacggtacccaaCAATGCGTTATCGGTTTTAAATTCTGTCGTGGAATCCGCCATCAGTGTTGAACACATCGAGCTTATAAAGGCCTGGCACATCTTTAAGGCTGTGGTGGTGGAGGAGAATGGGAATCATAGTGGCGGAGGGAATGGGAATTTGAGCTTGAGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAAGGGATGCCGGTGAAGAATCTCATGGCCGAGAGGTGGCACAGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTACAGTGGATTAATGATCTTTACAATGAACTGGAGTCAACTCCACCTGGCCCTTCGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCCGCAAACCCTTCCATGCCGGGTGAAGGAAGAACTGTATCCTGGTGTCTTGCCAAGCCCCAAAAATCAACTTGCAAAGGTTTATTTGGCTGCAGGGAGTGCAATGAATAAGGGTCAGGCAGAGAGAAGAGATTGCTAA 720 0.3861 MDTNKLSTDDDGEALRSGVANSFEQALDVEEKRIEKRADLPRAKTVPNNALSVLNSVVESAISVEHIELIKAWHIFKAVVVEENGNHSGGGNGNLSLSGGVNGGDQKGKKKGMPVKNLMAERWHRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQWINDLYNELESTPPGPSLQSSTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQLAKVYLAAGSAMNKGQAERRDC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03040 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Aip09g03040 239 MobiDBLite consensus disorder prediction 175 194 - -
Aip09g03040 239 Gene3D - 106 176 IPR036638 GO:0046983
Aip09g03040 239 CDD bHLH_AtAMS_like 116 186 - -
Aip09g03040 239 MobiDBLite consensus disorder prediction 87 112 - -
Aip09g03040 239 MobiDBLite consensus disorder prediction 87 101 - -
Aip09g03040 239 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 82 221 - -
Aip09g03040 239 PANTHER BHLH TRANSCRIPTIONAL FACTOR 82 221 - -
Aip09g03040 239 Pfam Helix-loop-helix DNA-binding domain 119 161 IPR011598 GO:0046983
Aip09g03040 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 176 IPR036638 GO:0046983
Aip09g03040 239 SMART finulus 118 167 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03040 Aip-Chr9 134471870 134480433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03040 113 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 76.667 2.23e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g03040 HLH 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03040 - - adu:107494642 210.69