Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03034 ATGGAAGAGCCTGTCGTAGTTAACAAAGGCAAGGAGCCGCTGGATTTGCCACCAGGTTTCGGACTCCACCCAACAGATGAAGAAATCATCACTTATTACCTCACCGAGAAGGTCATGAACAGCAACTTCAGTGCAACTGCCATAGGTGAAGCCGATTTGAACAAATCCGGACCTTGGGATTTACCAAAAAAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTTTGTCAGAAAGGTGACATCACAGATTGA 252 0.4563 MEEPVVVNKGKEPLDLPPGFGLHPTDEEIITYYLTEKVMNSNFSATAIGEADLNKSGPWDLPKKAKMGEKEWYFFCQKGDITD 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03034 83 Gene3D NAC domain 25 82 IPR036093 GO:0003677|GO:0006355
Aip09g03034 83 Pfam No apical meristem (NAM) protein 17 78 IPR003441 GO:0003677|GO:0006355
Aip09g03034 83 ProSiteProfiles NAC domain profile. 16 83 IPR003441 GO:0003677|GO:0006355
Aip09g03034 83 SUPERFAMILY NAC domain 11 79 IPR036093 GO:0003677|GO:0006355
Aip09g03034 83 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 78 - -
Aip09g03034 83 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03034 Aip-Chr9 134226226 134226572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03034 1 78 NAC Transcription Factor Family AT5G18270 73.418 3.34e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip09g03034 NAM 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03034 - - aip:110266267 179.489