Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02970 ATGGAGCTGGTGGCTTGTCGTTGCTGGGAAATCCGGAAGGCGCAGAACTTGTGGGACACCAATATGGCCCAAACCCAAAACAGAAGGCCTCTGCCCCACCCTGACCCAGATTTCAAGCCAGATTCCCTTTCCCCTTGTGCATGTGAGACTAAATCCTTGCCTTCCTTGCAGCAGCTCACCTTCATTAGTTACAAGATCGGAAGCATCTCGGTGCATAATAAGGTTCTATTGAAAGTTGCTGAGAAATTGGAGCTAAAGGTGATGATTGAGGAAATGGAATCTTCAATAAGCATTGATGATGTTCCCACGGTGTTCATTTGTCCAATTTCACTTGAGCCAATGCAAGAGCCAGTAACACTTTCAACTGGCCAAACCTATGAAAGATCCAACATCGTCAAATGGTTCTCACTTGGCCACAGAACTTGTCCCATAACATTGGGATGA 444 0.4617 MELVACRCWEIRKAQNLWDTNMAQTQNRRPLPHPDPDFKPDSLSPCACETKSLPSLQQLTFISYKIGSISVHNKVLLKVAEKLELKVMIEEMESSISIDDVPTVFICPISLEPMQEPVTLSTGQTYERSNIVKWFSLGHRTCPITLG 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02970 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 146 IPR013083 -
Aip09g02970 147 SMART Ubox_2 104 146 IPR003613 GO:0004842|GO:0016567
Aip09g02970 147 CDD RING-Ubox_PUB 105 145 IPR045210 -
Aip09g02970 147 Pfam U-box domain 101 145 IPR003613 GO:0004842|GO:0016567
Aip09g02970 147 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 72 146 - -
Aip09g02970 147 ProSiteProfiles U-box domain profile. 100 147 IPR003613 GO:0004842|GO:0016567
Aip09g02970 147 PANTHER WDSAM1 PROTEIN 72 146 IPR045185 GO:0061630
Aip09g02970 147 SUPERFAMILY RING/U-box 93 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02970 Aip-Chr9 132606163 132609412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02970 81 146 U-box Gene Family AT3G49810 68.182 3.53e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02970 - - tcc:18591947 109.768