Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02921 ATGCCCGCCTTGTCCAGTGTAAATTATGACATCTCCTTCGTCCATATCATCCTCGTAGCCACCGGAGACAATAACACTCGTTGCAATTGGCTCATTGTTGGGGCTCATGGAAGCTGCCAGCCAAAGATCCTTCATACTCATCATCTGCGCCGCACGAATATCCCCTCTTTGCCGCATCCACCGCGCCATCTTGGCATTGAAGGAGCCGCGACGGTCAACGACGAAGATGGCGGAACGGAAACCAAGGCGCGTGAATCCGCTTCGAGCGTTGCCTCAATCGGTGACGAAGTCGAAGGTGGACTTCGTGTTGAAGCAGTTGTCTTGGATGCGCTTGTTGAGGACGTCGCGGAGAGCATGGAAGTCGCCGGCGCTTCCAGCAGCATTGGTGCTggtgagagagaaagTGTAAATTATGACATCTCCTTTGTCCATATCATCCTCGTAGCCACCGGAGACAATAACACTCGTTGTAATTGGCTCATTGTTGGGGCTCATGGAAGCTGCCAGGTAATCAATGCCAGCCTAGATCTGACGGTGCAATCCAAGGACACACAATTCCATCTGAAAGAGGAACACGTCGCCAACATACACACCGGGAATCGCTCCGAAGATTCACTTATCACGGTTCAGCCAAAAATCCTTCATCCTCATCATTTGCGCCGCACGAATATCCCCTCTTTGCCGCATCCGCCGCGCCATCTTGGCATCGAAAGAGTCGCTCGCGATGATCAACGACGAAGATGGCAGAACGGAACCAAGGTGCGTGAATCCGCTTCGAGCGTTGCCTCAGTTGGTGATGAAGTCGAAGGTGGACTTCGTGTTGAAGCAGTTGTCTTGGATGCGCTTGTTGAGGGCGTCGCGGAGAGCATGGAAGTCACCGGCGCTTCCAGCAACATTGGTGCTgCAAAAGTTGTAAAGCATCGATATAAGTTGCTTTTTCGGTTTGACACGGAGGTTATTCCAATTTCTGATGATGAGTTTCCAGAGGCTTCATATTCATTAGAGACTGTTGAAAGTGTTGTTCAGATGGGACAAGATTCAGTCTACTTGATCGATGTCATGGGTTTCCTGATAAGTGTTCGTGACTATACTGATGTTGAACTTGACGATGGAAAAAAGTTTAAATTAGTTCTCATCCAATTGTATTCAAATGGCTCTTATCTCACCTGTAATTTATTTGGAGATTTTTTAACAAAGATGCGGTTGGCTCTTATGAATGCTGTCTCGCAACCGCCAATCATTTTACTCCAGTCTGTCAAGGTCAAGATTTATGAAGGGAAGGTTGTAGTTCAGAATGTAATAGATTGTACCAAAATCATGATCAATCCTGATATTCCAGAGGCTGTATGTTTTATTACTAGATTGGATCCTTCGGAGTCATATTTCATTGACTCTATCACCCTTGGTAATGGATTTATTGTTGCTGATGTCGATGATGATTTTGTCAATCTCTCTATGAATAGGAGTATTAAGGAATTAAGAGAAAATGATGCGGATGGTTTCTTCAATATTGTTGCTAAGATTAAAAGTATATGCAACAATTTTGATTGGTGGTACTACTCATGTGTCTGTGGTTATCCTTTGGAGCTTTTTAGAAATCATTTCAGTTGTTCCGAATGTGGAAGGAAAATAAAGAATGCTGTGAAGAAGTACAAGGTTTTAGTAGATGTTGAGGATGCTACTGGAAGTGCTAGATTTGTTTTGTATGACCGTCCTGCAACGCTCTTATTCAGGAAAAAGCTCATTGAGGTTCTTCGGGATTTTGATACTGAGCACTCGGTTGTGTATGCAACCCCTTATCCACCATTCTTTGATGATGTAATTGGAAAGGAAGTTGTGTTTAAAGTAGACCGAAAAAAAGTTGAAAATAGACCAGATGTTGGGACATTTAAAGTAGTCAACTGTTCTGATGATCATGTGATTGTTAACAAATTTAAGACAGATCCTGTTTCCAGTAGACTTCTCCCACCAACTGTATTTTCACCGATTTATGAGGATGTCATTCAAAATCCGCAGCCTCATGATGAAATATCATCTCTTGGTAGTAGAATCTCAGTTACTTCTGACAATATGGAATCTATTGAAGTTGATATGGAGGCTTTGGGTGCTGCATATAACCTTACAAAGCCGGATCCTTGTGTTCTGTTGGCTGGTACAATTACATCTATCTCTAATGATAAGAATTGGTGGTACTCAGTTTGTTTGTGTGGTGAAAAAATAGATGCCGACCAATCTAAGCTCTTTTGTCACCTTTGCTTGACACATTGTTCTGATGGAGTTTTGAGATACAAAGTAAAAGTTTATGTTAATCACGCTGGTGGTTGCAATGCATTAATTCTCCATGATGGAGATGTGCAGCACTTAATGGGGCGAAAATGTTCTGAGGTTTTAAGAGATGATAACTCCTTTATCTTGAATGAAGAATTTCACTTGGATGCATCTGATTTTTTGTACAAATTGATAGGAAAAAAATTGGTATTCATGGTTGATCCTCAACCCGTTGAGAGTGACACAATATGCCATGCGTATAATGTTTTTAAAGTTTCTACACATGAGTTTATGTTAAAGCTGATTGAACGTGTTGAGAATCGTGCTTTGAATACGTGTGCTATTGTTTCGGCCTCAAATGTGGCTTCTATTGAAGACACTGTTGCACATATTTCTGGTTCAGTATTACCTGATCACAAATCTGTTCGTGTGGTAAATGAAATTGTTTGCAACAAGAGATTGGCATCCCCATACCGTGATGTACCAAGATCTACAAAGCAAAAACTTGAAGATGCCTTTTCTAGGAGTATAGATGAAACTTGGAATGATAATGAGGAGACATCATCATCTATGAATATTTAA 2850 0.4168 MPALSSVNYDISFVHIILVATGDNNTRCNWLIVGAHGSCQPKILHTHHLRRTNIPSLPHPPRHLGIEGAATVNDEDGGTETKARESASSVASIGDEVEGGLRVEAVVLDALVEDVAESMEVAGASSSIGAGERESVNYDISFVHIILVATGDNNTRCNWLIVGAHGSCQVINASLDLTVQSKDTQFHLKEEHVANIHTGNRSEDSLITVQPKILHPHHLRRTNIPSLPHPPRHLGIERVARDDQRRRWQNGTKVRESASSVASVGDEVEGGLRVEAVVLDALVEGVAESMEVTGASSNIGAAKVVKHRYKLLFRFDTEVIPISDDEFPEASYSLETVESVVQMGQDSVYLIDVMGFLISVRDYTDVELDDGKKFKLVLIQLYSNGSYLTCNLFGDFLTKMRLALMNAVSQPPIILLQSVKVKIYEGKVVVQNVIDCTKIMINPDIPEAVCFITRLDPSESYFIDSITLGNGFIVADVDDDFVNLSMNRSIKELRENDADGFFNIVAKIKSICNNFDWWYYSCVCGYPLELFRNHFSCSECGRKIKNAVKKYKVLVDVEDATGSARFVLYDRPATLLFRKKLIEVLRDFDTEHSVVYATPYPPFFDDVIGKEVVFKVDRKKVENRPDVGTFKVVNCSDDHVIVNKFKTDPVSSRLLPPTVFSPIYEDVIQNPQPHDEISSLGSRISVTSDNMESIEVDMEALGAAYNLTKPDPCVLLAGTITSISNDKNWWYSVCLCGEKIDADQSKLFCHLCLTHCSDGVLRYKVKVYVNHAGGCNALILHDGDVQHLMGRKCSEVLRDDNSFILNEEFHLDASDFLYKLIGKKLVFMVDPQPVESDTICHAYNVFKVSTHEFMLKLIERVENRALNTCAIVSASNVASIEDTVAHISGSVLPDHKSVRVVNEIVCNKRLASPYRDVPRSTKQKLEDAFSRSIDETWNDNEETSSSMNI 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02921 949 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 308 573 - -
Aip09g02921 949 Gene3D - 480 638 IPR012340 -
Aip09g02921 949 Gene3D - 683 862 IPR012340 -
Aip09g02921 949 MobiDBLite consensus disorder prediction 55 90 - -
Aip09g02921 949 CDD RPA1_DBD_C 490 638 IPR013955 -
Aip09g02921 949 SUPERFAMILY Nucleic acid-binding proteins 493 618 IPR012340 -
Aip09g02921 949 SUPERFAMILY Nucleic acid-binding proteins 709 861 IPR012340 -
Aip09g02921 949 Gene3D - 326 461 IPR012340 -
Aip09g02921 949 SUPERFAMILY Nucleic acid-binding proteins 333 456 IPR012340 -
Aip09g02921 949 CDD RPA1_DBD_B_like 352 456 - -
Aip09g02921 949 PANTHER REPLICATION FACTOR A 1, RFA1 308 573 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02921 Aip-Chr9 131605871 131612706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02921 303 573 Core DNA Replication Machinery Family AT5G08020 23.875 9.50e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02921 - - aip:107616470 1148.27