Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02906 ATGGAAGCAGTTACTACTTCAACCGAGGAAACCGCCACAACCAGCGACTCACTTTCCATAACCCTATCCCCGGCTAAATCTCCTCCTCCGCCGCCGACAGCCACCAACAATACTGCCGACGGATGCGGCGTCGCTGCCGAGGTTGAGTCCCGGAAGCTACCGTCGTCCAAGTACAAAGGCGTCGTGCCCCAGCCCAACGGCCGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGTACCTTCAACGAGGAGGACGAAGCCGCCAGGGCCTACGACATCGCGGCGGTCAGATTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCACCTCACCGTAGCCGACGGTGACTCCGACGAATCCGACGACGGCTCAGAAACCGAGTTTCTGAATTCGCATTCCAAGTCCGAGATCGTGGACATGCTGAGGAAGCACACCTACGAGGAAGAGCTTCGTCAGAGCAAGCGAGGTGGCGCGTGCGGCGGAAAGAGGCACCGACGAGGCAACGGCGACAACATCGACGCGTCCTCCTTCGGCTCTGAGGGCGCGTGCGATCTTCGCGCGCGTGAACAGCTGTTCGAGAAAACGGTTACGCCTAGTGATGTTGGTAAACTGAATCGGTTAGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCGATACAGGGAAACGGTTGCGCCGCAGCGGCGAAAGGAGTGCTGTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTATGTGCTCACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAGCCTCCGGGCTGGTGATGCGGTTCGGTTTTACCGGTCGGCTGGACCAGACGGACAGCTGTACATTGACTGCAAAGCAAGGATGGGTAGTGGTGGTGTTGTAAATAGCCCTAATGAAGATGATAATACGAAGAATAATAAAAGAAATAATGGTTTGTTGATTCCGGTTGGACCGGTGGTTGAGCCGGTTCAGATTGTACGGCTATTCGGGGTCAACCTTTTGAAGCTTCCTGGTTCGGATGGGGTTGGTGGTGGATGCAATGGGAAGCGGAAAGAGATGGAGCTGTTTGCATTAGAATGTAGCAAGAAGCCAAAGATTATTGGAGCTTTAAATGATGAAGCGAAGAATGGGGCGGGGGAGAAGGTGGAGAAGGCAAGGGGGAAAACGGTGGTGGTGTATTTGCAACTTGCAGGTTGCAAATTGCGTGAAAAAGGAGAGGAGAAGAAGAAGAGCCGTAGGGTGACCGGCGACGACATCTTAGAAGGTGTTGCGTGTACGATGGGAGACTCGTTATGGCGTGTTGCGAGGAGGAAGCTAGGGAGGCTGGGCATCGCGAGTGGAAGAGTCGCCATGGATCAAAATAGTTGA 1410 0.5489 MEAVTTSTEETATTSDSLSITLSPAKSPPPPPTATNNTADGCGVAAEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAVRFRGKDAVTNFKHLTVADGDSDESDDGSETEFLNSHSKSEIVDMLRKHTYEEELRQSKRGGACGGKRHRRGNGDNIDASSFGSEGACDLRAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPIQGNGCAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDAVRFYRSAGPDGQLYIDCKARMGSGGVVNSPNEDDNTKNNKRNNGLLIPVGPVVEPVQIVRLFGVNLLKLPGSDGVGGGCNGKRKEMELFALECSKKPKIIGALNDEAKNGAGEKVEKARGKTVVVYLQLAGCKLREKGEEKKKSRRVTGDDILEGVACTMGDSLWRVARRKLGRLGIASGRVAMDQNS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02906 469 SMART rav1_2 57 118 IPR001471 GO:0003700|GO:0006355
Aip09g02906 469 MobiDBLite consensus disorder prediction 156 177 - -
Aip09g02906 469 Gene3D - 186 307 IPR015300 -
Aip09g02906 469 Pfam B3 DNA binding domain 196 296 IPR003340 GO:0003677
Aip09g02906 469 MobiDBLite consensus disorder prediction 1 43 - -
Aip09g02906 469 ProSiteProfiles B3 DNA-binding domain profile. 196 302 IPR003340 GO:0003677
Aip09g02906 469 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
Aip09g02906 469 MobiDBLite consensus disorder prediction 1 23 - -
Aip09g02906 469 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Aip09g02906 469 ProSiteProfiles AP2/ERF domain profile. 57 112 IPR001471 GO:0003700|GO:0006355
Aip09g02906 469 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Aip09g02906 469 CDD B3_DNA 195 296 IPR003340 GO:0003677
Aip09g02906 469 SUPERFAMILY DNA-binding pseudobarrel domain 195 299 IPR015300 -
Aip09g02906 469 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 5 384 - -
Aip09g02906 469 Gene3D AP2/ERF domain 56 113 IPR036955 GO:0003700|GO:0006355
Aip09g02906 469 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 384 IPR044800 GO:0003700
Aip09g02906 469 SMART B3_2 196 301 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02906 Aip-Chr9 131046358 131049349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02906 5 383 RAV Transcription Factor Family AT1G13260 53.571 2.02e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Aip09g02906 B3 4.6e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02906 K09287 - gmx:100789009 483.026