Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02833 ATGGAGCAACTTCTTGAGAAGATAATGTCTATGCAGTCAAGGAGTGACAGCGTTAACACTTCTCTTTTTGACAAAAGGGAGCACATAGAGAAGCTGCATCGTACTTGCAATCTTCTCCGTAAAGTTCAGGTCCCTCCGATGGGGTTATTTCCCAACTGTCTTGTGCAACAACAAGTTCTTTATCCATTCTGGAAGCAGGTTGGTGGAACTATTTTGTCTGCAAAACTTGCAAAAGAGAGAGGATGGGCCATTAACGTAGGAGGAGGATTTCATCACTACTCTGCAGAAAAAGGAGATGGATTTTGTGCTTATGCAGATATTTCTCTTTGCATCCACTTTGCTTTGGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACAGACTTTGCCTATGATAGTATGGCCACCAAAATAACTCCTTATGTTAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACCAGGTGCTATTTGATCAGGGTACTTATGACAAGCTCCTCTCTGAAGCTCCCAAATTCAAGCTCATCACTCCTTCTATTCTCTCTGATCGTTTGAGGTATAAGCAGTGGTGA 609 0.422 MEQLLEKIMSMQSRSDSVNTSLFDKREHIEKLHRTCNLLRKVQVPPMGLFPNCLVQQQVLYPFWKQVGGTILSAKLAKERGWAINVGGGFHHYSAEKGDGFCAYADISLCIHFALVRLNISRVMIIDLDAHQGNGHETDFAYDSMATKITPYVKWSKGKQKEKVNNQVLFDQGTYDKLLSEAPKFKLITPSILSDRLRYKQW 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02833 202 Pfam Histone deacetylase domain 22 144 IPR023801 -
Aip09g02833 202 PANTHER - 23 144 - -
Aip09g02833 202 Pfam S25 ribosomal protein 154 198 IPR004977 -
Aip09g02833 202 Gene3D - 152 200 - -
Aip09g02833 202 PRINTS Histone deacetylase superfamily signature 122 137 IPR000286 -
Aip09g02833 202 PRINTS Histone deacetylase superfamily signature 88 111 IPR000286 -
Aip09g02833 202 PANTHER HISTONE DEACETYLASE 11 23 144 - -
Aip09g02833 202 SUPERFAMILY Arginase/deacetylase 26 144 IPR023696 -
Aip09g02833 202 Gene3D Histone deacetylase domain 4 149 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02833 Aip-Chr9 128896615 128899149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02833 161 198 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 92.105 1.80e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02833 K11418 - ahf:112775665 298.13