Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02789 ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTCGTGTACCGGTTTAACGCCTTACTTCCAAAGCGCCAAGGCTACCTCAAGGCTTTCTCTACCGAAGAAATTGTTCGGACGTATGGGCTATTGTTGTCAGAACTCACCTCCACTGTGAATCCCATCATTACCGATCTCACTATCATTGCCGGCCAGCAGACGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGCGAAGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAACCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTAGACCGATTCTTGGGGCACATGTTATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAGGTTGGACTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGGATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCTAAGACTTGTAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCATGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCATCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTCAATATGGGGGCTGCTCCCCCTGCTTTCAATGCTCATGCTACTCGTCCTTCCGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTCTGTTTATGCATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCAAGGACATGGTGCCTCAATAAGTATGCCCATCTCAAATCCATTACCTGATATGCAGGGCCAAAGTTTGCATTTACATGGGGGAACCTTGCCACCTTTACGTCCAAGCCTCCCAACTGCTCCATCACAAATAATGTCTCATCCCCATGGCGATGATTCGGTGACAAGTCAACCACCACCTGCATATCTTGATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACCAATCCACCCACCGGACTGGATTCCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAACACAGTAGACATATGGATTGGCATGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCCTGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCGGGGTCGTTGGTTCCCGAGGAGACAGGGGAAATGAAAGCCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCTTCAACCAACAGTGAAGCTACCAAGAGAGTACTCCACACTATTCAAACCCCTTTCTCCTTCATTTCTCTTCCCATTTTGGATCTGAACTTGTTCTTCTTCCCTCTTCTCTCCACGCATGCATTAGCCCTAACCTCATCTCAGAGGAGATCGCTAGTTTCCATTGGAGAAGATGCTGACTAA 2148 0.4516 MANGITHEPSPSMLVYRFNALLPKRQGYLKAFSTEEIVRTYGLLLSELTSTVNPIITDLTIIAGQQTKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQPFANHLGAYDFRRPILGAHVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTREGGLDEWQQKRFSSDGWNIFQTSKTCNLNDEQQRQSPRALIEAYGCDKGHEIPSTKLLLVEQHPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCSRNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAAPPAFNAHATRPSGLNPAFPLQKRPRSLFEPINVNNNTNVGHGPNRTLFMHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGSSLQGHGASISMPISNPLPDMQGQSLHLHGGTLPPLRPSLPTAPSQIMSHPHGDDSVTSQPPPAYLDLISSLVNHGVISVTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSLWLSGAEASGKESIPGSLVPEETGEMKAMDRHQLGPIVHSKCRSDSDSTMPSTNSEATKRVLHTIQTPFSFISLPILDLNLFFFPLLSTHALALTSSQRRSLVSIGEDAD 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02789 715 Gene3D - 29 159 IPR008942 -
Aip09g02789 715 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 632 - -
Aip09g02789 715 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 632 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip09g02789 715 CDD CID_Pcf11 38 159 - -
Aip09g02789 715 MobiDBLite consensus disorder prediction 486 500 - -
Aip09g02789 715 SMART 558neu5 36 158 IPR006569 -
Aip09g02789 715 MobiDBLite consensus disorder prediction 319 343 - -
Aip09g02789 715 MobiDBLite consensus disorder prediction 434 453 - -
Aip09g02789 715 SUPERFAMILY ENTH/VHS domain 34 159 IPR008942 -
Aip09g02789 715 Pfam CID domain 53 151 IPR006569 -
Aip09g02789 715 MobiDBLite consensus disorder prediction 461 503 - -
Aip09g02789 715 ProSitePatterns Zinc finger C2H2 type domain signature. 562 582 IPR013087 -
Aip09g02789 715 ProSiteProfiles CID domain profile. 33 161 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02789 Aip-Chr9 127629403 127637721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02789 473 652 C2H2 Transcription Factor Family AT4G04885 44.492 2.74e-48 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g02789 CID 1.8e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02789 K14400 - aip:107640327 598.586