Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02755 ATGGAAACACCAGAGGAACTCACCTTGGGTTCCAAAGACCATACCAACATCGTCAAAGGCAAGAGAACAAAGAGGGTACGGCCTCAATCCCCCATCCCCTTCTCCATCGCCGCAGCAGAAGAAGAAGGAGGGGAGACTAATATACCATCGCAACGACAAGAAGAAGAAAAAGAAGATATTATTTACAATGCGAATGCGAATGGCAACACAGCAACTACTTCTTCCGTGGGTCCACGAGACAGCACGGAAGAAGAGGAGGACATGGCCAACTGCCTCATCCTGTTAGCACAAGGACAATCCAGGGAATCCCCAAGACGCCCGGCCGCCGTAGCAGAAGAAGAAGGAGGAGGAACAAGCTACAACAAGTACAGCAGTAGGAAGTTTCTAGAAGCTGCCGGAGTCGGCGTTGGGTACGGAGGAGGAAGAACAGGAGGATATTATGTATACGAGTGCAAAACATGTAACAGGACATTTCCGTCTTTTCAAGCACTTGGTGGACACAGGGCAAGCCACAAGAAACCCAAGGCCGCCATTCCTGCAATCTCCATTCACCAAGAAAGAAAACAACCACCGCCATTGTTCTCCTCAGACGAAGAAGAGTTCCAATTCAAGAACACCACCGCCAACAAATCAAGCTTCCTCCAGTTGAACACAAGAGGGAATAATTTGTATAGCAATAACAATAACAAATCCAAGGTTCACGAATGTTCCATTTGCGGAGCTGAATTTACATCTGGACAGGCACTTGGTGGACATATGAGGCGGCACCGAGCTCCGGTGGGGACTAACACTAACACTAACACCACGCTTTCGCTGACCACGACCACCACGGCTGCCGCCATGGAAGCAGATGAGGAGCAACCTAAGAAGAAGACGAAGGTGTTATCTTTGGATTTGGATCTCAACCTTCCGGCACCGGAAGATCAAGATCAAAGGGAATCCAAGTTTGCCTTTGTATCCAAGCAACCACCAACGCAACCGCAACCCCAACCGCAACCGCAGAAGCAGCAACCACAAACAAGTCTTGTCTTCTCTACTACACCAGCTTTGGTGGATTGTCATTACTGA 1068 0.4906 METPEELTLGSKDHTNIVKGKRTKRVRPQSPIPFSIAAAEEEGGETNIPSQRQEEEKEDIIYNANANGNTATTSSVGPRDSTEEEEDMANCLILLAQGQSRESPRRPAAVAEEEGGGTSYNKYSSRKFLEAAGVGVGYGGGRTGGYYVYECKTCNRTFPSFQALGGHRASHKKPKAAIPAISIHQERKQPPPLFSSDEEEFQFKNTTANKSSFLQLNTRGNNLYSNNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTNTNTTLSLTTTTTAAAMEADEEQPKKKTKVLSLDLDLNLPAPEDQDQRESKFAFVSKQPPTQPQPQPQPQKQQPQTSLVFSTTPALVDCHY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02755 355 MobiDBLite consensus disorder prediction 250 271 - -
Aip09g02755 355 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 355 - -
Aip09g02755 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Aip09g02755 355 SUPERFAMILY beta-beta-alpha zinc fingers 148 256 IPR036236 -
Aip09g02755 355 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Aip09g02755 355 MobiDBLite consensus disorder prediction 20 84 - -
Aip09g02755 355 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Aip09g02755 355 SMART c2h2final6 149 171 IPR013087 -
Aip09g02755 355 SMART c2h2final6 234 256 IPR013087 -
Aip09g02755 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 256 IPR013087 -
Aip09g02755 355 MobiDBLite consensus disorder prediction 47 61 - -
Aip09g02755 355 MobiDBLite consensus disorder prediction 302 347 - -
Aip09g02755 355 MobiDBLite consensus disorder prediction 63 78 - -
Aip09g02755 355 Pfam C2H2-type zinc finger 233 259 - -
Aip09g02755 355 Pfam C2H2-type zinc finger 148 174 - -
Aip09g02755 355 PANTHER ZINC FINGER PROTEIN ZAT5 11 355 - -
Aip09g02755 355 Gene3D Classic Zinc Finger 147 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02755 Aip-Chr9 126803185 126804896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02755 1 355 C2H2 Transcription Factor Family AT5G04390 41.944 2.92e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g02755 zf-C2H2_6 7.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02755 - - gmx:100799383 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01832 06 51970736 51971904 Aip09g02755 09 126803185 126804896 ECH
Aip02g03305 02 109778426 109779307 Aip09g02755 09 126803185 126804896 ECH
Aip08g00577 08 5029550 5030663 Aip09g02755 09 126803185 126804896 ECH
Aip03g00281 03 2737167 2738541 Aip09g02755 09 126803185 126804896 ECH
Aip09g02755 09 126803185 126804896 Aip09g02755 09 126803185 126804896 ECH