Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02709 ATGAACAACACTTCCAATTCTACCGAGGACTCTCAAGAGGACATGACCGGATACACGTATTATTCGGTTTCTTTGTCTCTTGGCTTCCTCCTCTTGATGGCATTCATAGCTCTCACTGCATACTACTGCAGCAAAAGCAGGATTCGAGACGAGCGAACTGGACCAAGCTCCGGAAGAACCAATAGCAGTTTCAATTCAAACAGGACAGTGATCATGGACAGAGACCCATCCTCTATAACAATACAAATTGGTGAGGAGCAACAACAAATGCAAGAATCAATCCTCAAAAGTTATCCTATGTTGTTGTTCTCCCAAGCCAAGCTTCATCAAAAGGCTGATGATCCAACAGAACTTCTTAGTTGCTCAATATGTTTGGCAGATTACGCAGACTCAGAGTGGTTAAGGCTATTGCCTGATTGTGGCCATTTTTTTCATAGGGATTGTATTGATGTATGGTTGAGGCTAAACCTTTCTTGTCCAATGTGTAGGAACTCTCCATTACCCACCCCTCTTGCTGAAGTTGCTCCCTTGGCCGCTACAAGGAGTCATTGA 552 0.4384 MNNTSNSTEDSQEDMTGYTYYSVSLSLGFLLLMAFIALTAYYCSKSRIRDERTGPSSGRTNSSFNSNRTVIMDRDPSSITIQIGEEQQQMQESILKSYPMLLFSQAKLHQKADDPTELLSCSICLADYADSEWLRLLPDCGHFFHRDCIDVWLRLNLSCPMCRNSPLPTPLAEVAPLAATRSH 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02709 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
Aip09g02709 183 SUPERFAMILY RING/U-box 95 166 - -
Aip09g02709 183 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 173 - -
Aip09g02709 183 SMART ring_2 121 162 IPR001841 -
Aip09g02709 183 Pfam Ring finger domain 120 163 IPR001841 -
Aip09g02709 183 CDD RING-H2_PA-TM-RING 121 163 - -
Aip09g02709 183 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Aip09g02709 183 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 173 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02709 Aip-Chr9 125249309 125249860 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02709 11 178 C3H Transcription Factor Family AT5G06490 34.831 9.00e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02709 - - adu:107466513 354.369