Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02708 ATGTCCAATAATTCCACTTCTCAATCAAAAGATGGTTTTGATGCTAGTGGTTTCACATATGGCGTAGCATTCATACTAGTAGCCGGTGTTCCTCCGTCGTCACAATCTCATCGAACATTGGAACACCACGTGGATATTCGTATCGACACGAGTTATGAGAATTACCCTAAGATGCCATATTCCGATGAGGTAAAGAACAAAAATGGTGTTGTGGGTGGATGCACCATATGCTTAGGCGACTATAAAGAGAATGAGATGTTGAGGGTTCTTCCTGGTTGTGGCCATGCCTTTCACCAAGCTTGTGTTGATCCATGGCTCATGTTGCACTCCACATGTCCCATATGCCGAAAATCATTGCCTCAAGCTCCATAG 372 0.4409 MSNNSTSQSKDGFDASGFTYGVAFILVAGVPPSSQSHRTLEHHVDIRIDTSYENYPKMPYSDEVKNKNGVVGGCTICLGDYKENEMLRVLPGCGHAFHQACVDPWLMLHSTCPICRKSLPQAP 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02708 123 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Aip09g02708 123 Pfam Ring finger domain 74 116 IPR001841 -
Aip09g02708 123 CDD RING-H2_PA-TM-RING 74 116 - -
Aip09g02708 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 122 IPR013083 -
Aip09g02708 123 SMART ring_2 74 115 IPR001841 -
Aip09g02708 123 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 35 119 IPR045899 -
Aip09g02708 123 SUPERFAMILY RING/U-box 56 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02708 Aip-Chr9 125219521 125219973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02708 53 118 C3H Transcription Factor Family AT5G06490 47.887 7.58e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02708 - - adu:107466507 247.284