Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02660 ATGGATCGGGTCGGGTCCAAGCGCGGGTCTGGTGGGTCGGAGCAGATGAAGCGCGAGTGGACAAGCCGAGGCGCGACACGTGGTTTTGCTCCTATGATTAGTTGTCTTTATGCCATTGAATGGAGATGCATATGGACTGAGATTTTGTTTTTCCTCCATTTCCATCCTCAATTTGAATTAAAAAAGTGTGAAAAAATTCAAGCTACAGTTAAGAAACCACTTCTTAATAGGTTTAGGGATCATATAGTCGAAGGTCAAGTTTATAGAATGGCATACTTTATTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTTCTTTTTCTAAGCTGTTGAACATGACCCAAGATTATGATTTTTTAGTTGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATAATTGTGCTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATTATTTCTTTACCTCTGGCTATGTGGAGCAGCCTGTTGTTGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGCTGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTTTTGAATTCAGGCAGAGTATGATTGAGCAAGGTGTCAATGGTACCCAGCCATTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGAAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCGTGTGTGTGTGAAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACACTTGAAGATCATAGTGGGGAGAATATTTTCCTTCTCTTTGATCATGAGGCATCTTATTTGCTTAAGAAATTATGTGCTGACTTGTTTACTAAGGTTCAAAGAGATGCAAGTCTTATATGTGAGGATACTTATCCTCCCATATTTCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGCCGCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCAACATTATTGCCATGTTTGAACTTCCCAATTATGATGCTGATGACGAGTCTACTCCAAAAAAGGAGCCTGATTTAGACAAATCTGTTCCCTGTGAAAAAGGGGATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGACAAAGTTGCTGGTGAGTGTTCTGGGATTTTATCTAAATTCCCAGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTGCTATTTCCGAAGGGACTGAGTTTGCTGCCTTAATTAATGGTGAAGATGTAAAAGATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCACCGGAAAAAACCTCAGGAGGTGTTGTCCACGTTCTTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGTCACCTCGAATGGCAAGAGAAATTTGAATCCCCAATTTGAAGAGGCGGCTGCTGATGCAGATGGGCGTAGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1827 0.3853 MDRVGSKRGSGGSEQMKREWTSRGATRGFAPMISCLYAIEWRCIWTEILFFLHFHPQFELKKCEKIQATVKKPLLNRFRDHIVEGQVYRMAYFIVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFSFSKLLNMTQDYDFLVVGEEKEYAKEGKIVKIIVLELTSKDLTVRCALFGDYVNQVNYFFTSGYVEQPVVVIQLAKVKFFRGQVGLQNVLYATQMLFNPDLPEVFEFRQSMIEQGVNGTQPLFIANEGKVVSLKDDFMRLTRKCTIEELQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCEKGIYPQNGAYYCDFCLKHITNVTPRFKIKITLEDHSGENIFLLFDHEASYLLKKLCADLFTKVQRDASLICEDTYPPIFQGLIGKKLLLKVDTKGAAHDTFYGTFRVRRICDDPNIIAMFELPNYDADDESTPKKEPDLDKSVPCEKGDIGIKKESSKTFIKSDKVAGECSGILSKFPVLIDFLAEKQPAISEGTEFAALINGEDVKDEKTPSNDTVSDDLSAELDILLSSPEKTSGGVVHVLDAPSQYGEKLIHENHVVTSNGKRNLNPQFEEAAADADGRRFKIAKVNGV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02660 608 SUPERFAMILY Nucleic acid-binding proteins 65 124 IPR012340 -
Aip09g02660 608 Gene3D - 58 124 IPR012340 -
Aip09g02660 608 PANTHER REPLICATION FACTOR A 1, RFA1 80 376 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g02660 608 Pfam Domain of unknown function DUF223 63 144 IPR003871 -
Aip09g02660 608 CDD RPA1_DBD_C 281 424 IPR013955 -
Aip09g02660 608 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 80 376 - -
Aip09g02660 608 SUPERFAMILY Nucleic acid-binding proteins 132 246 IPR012340 -
Aip09g02660 608 Gene3D - 268 431 IPR012340 -
Aip09g02660 608 Gene3D - 126 255 IPR012340 -
Aip09g02660 608 SUPERFAMILY Nucleic acid-binding proteins 278 427 IPR012340 -
Aip09g02660 608 CDD RPA1_DBD_B_like 152 247 - -
Aip09g02660 608 CDD RPA1_DBD_A_like 61 119 - -
Aip09g02660 608 Pfam Replication factor-A C terminal domain 295 410 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02660 Aip-Chr9 124268517 124273077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02660 65 373 Core DNA Replication Machinery Family AT2G06510 22.255 7.71e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02660 - - adu:107471135 936.406