Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02657 ATGGCAATGGAATCAAAGTTTTTGGACAACGACAATGCAACCATAAGAAGTTCTCATCACTCTCTTACTGCTTCTCATCATGTTCATGCAAACTATTCAATGGAATCACCTGAAAGGCTTTTTTTGTGTTCACATTCAATGAAAGAAGAAGAGTTACTACCCTATGATGCCACTTTGATTGGCCATGTCCCTTCAAGTTTCCATGGCCATGAAGACACAGGAAATGGGCAAGAGAAAAACCATACCTTTCAAAAATTCAATAACAACCCTCTGAATCTATTGGAGACTCTGCCAGCATTAACCATAGCACCCTCTTCTTCTGATGACTCACCACCTTCTTTGACTTCTCCTCCTCCTTTGTCACACAAATTTCCAAACTTGACCTTGTTCTTGCAGGAAACTTCCATGCTCTACTCATCATCCCCGCATCTAAAAAGTGGTGAATCCATCTCGTCAAAATCTTCAAACTCCACATTTCCATTGTCGCAATTCCGCCAAACTCAGCGCCAAACAACCACCGCCGATCCACACAAAATAAGCAAGAATCTATCAAACATGAGGAGGTCCAAGTCTTTCAGTGACCACCACAATTGGTTGAGCACAAGGACACAACCTCTTAAGTGCGGCGGCGGAGATGGAAGAGTCAACAACAACAACAAGCTTTTCAAAGGGGTGAGACAAAGACACTGGGGAAAATGGGTTGCTGAGATAAGATTACCAAGAAACAGGACAAGGGTATGGTTAGGAACATTTGATACAGCTGAAGATGCAGCCATTGCATATGATACTGCAGCATATATACTAAGAGGAGATTATGCACAGTTGAATTTCCCTGAATTGAAGCATGTGATCAAGGCCAATTCTCTGAATGGAACCATTTCAGCACTCGTTGAGGCAAAACTACAAACAGTTCATCTGCATAAGAAGAATCCCAATAACAATAACAATAGCAACAAGAACAATTATGATGATTCACCACCATCAGCAGTTTCAGCATGCAAAAATAATGGCAATAAGGGTTCATCATCAAGCATAATGGAGTTGCAGTTTGAGGAAATCGAGAGAAGCAAAAGTCTTTCTCATCATCATGATCATCATCAAGTTTTGGATGTGGAAGGTGTTCAATTGAGCAGAATACCATCATTGGATATGGACCTTATTTGGGATGCACTTTTAGTCTCTGATTCATGA 1191 0.4097 MAMESKFLDNDNATIRSSHHSLTASHHVHANYSMESPERLFLCSHSMKEEELLPYDATLIGHVPSSFHGHEDTGNGQEKNHTFQKFNNNPLNLLETLPALTIAPSSSDDSPPSLTSPPPLSHKFPNLTLFLQETSMLYSSSPHLKSGESISSKSSNSTFPLSQFRQTQRQTTTADPHKISKNLSNMRRSKSFSDHHNWLSTRTQPLKCGGGDGRVNNNNKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGDYAQLNFPELKHVIKANSLNGTISALVEAKLQTVHLHKKNPNNNNNSNKNNYDDSPPSAVSACKNNGNKGSSSSIMELQFEEIERSKSLSHHHDHHQVLDVEGVQLSRIPSLDMDLIWDALLVSDS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02657 396 SUPERFAMILY DNA-binding domain 221 278 IPR016177 GO:0003677
Aip09g02657 396 MobiDBLite consensus disorder prediction 141 176 - -
Aip09g02657 396 CDD AP2 220 280 IPR001471 GO:0003700|GO:0006355
Aip09g02657 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 395 - -
Aip09g02657 396 ProSiteProfiles AP2/ERF domain profile. 221 278 IPR001471 GO:0003700|GO:0006355
Aip09g02657 396 MobiDBLite consensus disorder prediction 102 121 - -
Aip09g02657 396 MobiDBLite consensus disorder prediction 307 342 - -
Aip09g02657 396 SMART rav1_2 221 284 IPR001471 GO:0003700|GO:0006355
Aip09g02657 396 Gene3D AP2/ERF domain 221 279 IPR036955 GO:0003700|GO:0006355
Aip09g02657 396 Pfam AP2 domain 222 269 IPR001471 GO:0003700|GO:0006355
Aip09g02657 396 PRINTS Ethylene responsive element binding protein signature 244 260 IPR001471 GO:0003700|GO:0006355
Aip09g02657 396 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Aip09g02657 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 4 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02657 Aip-Chr9 124230159 124231370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02657 90 391 AP2-EREBP Transcription Factor Family AT4G13620 43.092 1.54e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip09g02657 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02657 - - aip:107616692 717.613